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Commit 8ed0aa54 authored by Piotr Gawron's avatar Piotr Gawron
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parent compartment/pathway for compartment/pathway should include child completely

parent c5d4358e
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2 merge requests!1847Master to dev,!1846Resolve "for some translocations the reactant and product are the same species in CellDesigner or SBML exports"
Pipeline #100048 canceled
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persist/src/main/resources/db/migration/hsql/18.0.8/V18.0.8.20250110__set_proper_pathway_and_compartment.sql 0 → 100644
+ 70
− 0
View file @ 8ed0aa54
update element_table child
set compartment_id = null
where element_type_db = 'PATHWAY';
update element_table child
set compartment_id =
(select id
from element_table parent
where parent.element_type_db like '%COMPARTMENT'
and parent.model_id = child.model_id
and parent.x < child.x + child.width
and parent.x + parent.width > child.x
and parent.y < child.y + child.height
and parent.y + parent.height > child.y
and id <> child.id
order by parent.width * parent.height
limit 1)
where element_type_db <> 'PATHWAY'
and not element_type_db like '%COMPARTMENT';
;
update element_table child
set compartment_id =
(select id
from element_table parent
where parent.element_type_db like '%COMPARTMENT'
and parent.model_id = child.model_id
and parent.x < child.x
and parent.x + parent.width > child.x + child.width
and parent.y < child.y
and parent.y + parent.height > child.y + child.height
and id <> child.id
order by parent.width * parent.height
limit 1)
where element_type_db like '%COMPARTMENT';
;
update element_table child
set pathway_id =
(select id
from element_table parent
where parent.element_type_db = 'PATHWAY'
and parent.model_id = child.model_id
and parent.x < child.x + child.width
and parent.x + parent.width > child.x
and parent.y < child.y + child.height
and parent.y + parent.height > child.y
and id <> child.id
order by parent.width * parent.height
limit 1)
where element_type_db <> 'PATHWAY'
and not element_type_db like '%COMPARTMENT';
;
update element_table child
set pathway_id =
(select id
from element_table parent
where parent.element_type_db = 'PATHWAY'
and parent.model_id = child.model_id
and parent.x < child.x
and parent.x + parent.width > child.x + child.width
and parent.y < child.y
and parent.y + parent.height > child.y + child.height
and id <> child.id
order by parent.width * parent.height
limit 1)
where element_type_db = 'PATHWAY'
or element_type_db like '%COMPARTMENT';
;
persist/src/main/resources/db/migration/postgres/18.0.8/V18.0.8.20250110__set_proper_pathway_and_compartment.sql 0 → 100644
+ 70
− 0
View file @ 8ed0aa54
update element_table child
set compartment_id = null
where element_type_db = 'PATHWAY';
update element_table child
set compartment_id =
(select id
from element_table parent
where parent.element_type_db like '%COMPARTMENT'
and parent.model_id = child.model_id
and parent.x < child.x + child.width
and parent.x + parent.width > child.x
and parent.y < child.y + child.height
and parent.y + parent.height > child.y
and id <> child.id
order by parent.width * parent.height
limit 1)
where element_type_db <> 'PATHWAY'
and not element_type_db like '%COMPARTMENT';
;
update element_table child
set compartment_id =
(select id
from element_table parent
where parent.element_type_db like '%COMPARTMENT'
and parent.model_id = child.model_id
and parent.x < child.x
and parent.x + parent.width > child.x + child.width
and parent.y < child.y
and parent.y + parent.height > child.y + child.height
and id <> child.id
order by parent.width * parent.height
limit 1)
where element_type_db like '%COMPARTMENT';
;
update element_table child
set pathway_id =
(select id
from element_table parent
where parent.element_type_db = 'PATHWAY'
and parent.model_id = child.model_id
and parent.x < child.x + child.width
and parent.x + parent.width > child.x
and parent.y < child.y + child.height
and parent.y + parent.height > child.y
and id <> child.id
order by parent.width * parent.height
limit 1)
where element_type_db <> 'PATHWAY'
and not element_type_db like '%COMPARTMENT';
;
update element_table child
set pathway_id =
(select id
from element_table parent
where parent.element_type_db = 'PATHWAY'
and parent.model_id = child.model_id
and parent.x < child.x
and parent.x + parent.width > child.x + child.width
and parent.y < child.y
and parent.y + parent.height > child.y + child.height
and id <> child.id
order by parent.width * parent.height
limit 1)
where element_type_db = 'PATHWAY'
or element_type_db like '%COMPARTMENT';
;
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