jaxws version fixed in pom

annotation/pom.xml

@@ -83,6 +83,41 @@
 			<groupId>uk.ac.ebi.chebi.webapps.chebiWS.client</groupId>
 			<artifactId>chebiWS-client</artifactId>
 			<version>${chebi-ws.version}</version>
+			<exclusions>
+				<exclusion>
+    		    <groupId>com.sun.xml.ws</groupId>
+            <artifactId>jaxws-rt</artifactId>
+        </exclusion>
+				<exclusion>
+    		    <groupId>com.sun.xml.ws</groupId>
+            <artifactId>jaxws-api</artifactId>
+        </exclusion>
+				<exclusion>
+    		    <groupId>com.sun.xml.ws</groupId>
+            <artifactId>jaxws-tools</artifactId>
+        </exclusion>
+			</exclusions>
+		</dependency>
+
+		<!-- https://mvnrepository.com/artifact/com.sun.xml.ws/jaxws-rt -->
+		<dependency>
+		    <groupId>com.sun.xml.ws</groupId>
+		    <artifactId>jaxws-rt</artifactId>
+		    <version>${jaxws.version}</version>
+		    <type>pom</type>
+		</dependency>
+		<!-- https://mvnrepository.com/artifact/javax.xml.ws/jaxws-api -->
+		<dependency>
+		    <groupId>javax.xml.ws</groupId>
+		    <artifactId>jaxws-api</artifactId>
+		    <version>${jaxws.version}</version>
+		</dependency>
+		<!-- https://mvnrepository.com/artifact/com.sun.xml.ws/jaxws-tools -->
+		<dependency>
+		    <groupId>com.sun.xml.ws</groupId>
+		    <artifactId>jaxws-tools</artifactId>
+		    <version>${jaxws.version}</version>
+		    <type>pom</type>
 		</dependency>
 
 		<!-- Spring -->

converter-sbml/pom.xml

@@ -76,7 +76,7 @@
 		<dependency>
 			<groupId>org.sbml.jsbml</groupId>
 			<artifactId>jsbml</artifactId>
-			<version>1.3.1</version>
+			<version>1.4</version>
 			<!-- for now we use lower version of log4j and this one introduce some 
 				problem with tomcat loggin -->
 			<exclusions>

pom.xml

@@ -59,6 +59,8 @@
 		<gson.version>2.2.2</gson.version>
 		
 		<chebi-ws.version>2.3.2</chebi-ws.version>
+		
+		<jaxws.version>2.2.7</jaxws.version>
 
 		<miriam-lib.version>1.1.5</miriam-lib.version>
 		

rest-api/pom.xml

@@ -20,15 +20,10 @@
 			<version>1.0</version>
 		</dependency>
 
-		<dependency>
-			<groupId>lcsb.mapviewer</groupId>
-			<artifactId>service</artifactId>
-			<version>1.0</version>
-		</dependency>
 
 		<dependency>
 			<groupId>lcsb.mapviewer</groupId>
-			<artifactId>converter-sbml</artifactId>
+			<artifactId>service</artifactId>
 			<version>1.0</version>
 		</dependency>
 

rest-api/src/test/java/lcsb/mapviewer/api/convert/ConvertRestImplTest.java

@@ -18,7 +18,7 @@ import lcsb.mapviewer.converter.IConverter;
 import lcsb.mapviewer.converter.model.sbml.SbmlParser;
 import lcsb.mapviewer.model.map.model.Model;
 
-public class ConvertRestImplTest extends RestTestFunctions {
+public class ConvertRestImplTest {
 
   @SuppressWarnings("unused")
   private Logger logger = Logger.getLogger(ConvertRestImplTest.class);
@@ -44,7 +44,7 @@ public class ConvertRestImplTest extends RestTestFunctions {
     try {
     	IConverter converter = new SbmlParser();
 
-        Model model = converter.createModel(new ConverterParams().filename("testFiles/example1.xml"));
+        Model model = converter.createModel(new ConverterParams().filename("testFiles/convert/sample-sbml.xml"));
         model.setName(null);
 
         converter.exportModelToFile(model, "tmp.xml");

service/pom.xml

@@ -65,6 +65,14 @@
 			<version>1.0</version>
 		</dependency>
 
+		<!-- dependency from the SBML parser -->
+		<dependency>
+			<groupId>lcsb.mapviewer</groupId>
+			<artifactId>converter-sbml</artifactId>
+			<version>1.0</version>
+		</dependency>
+
+
 		<!-- Log4J -->
 		<dependency>
 			<groupId>log4j</groupId>