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minerva
core
Commits
3be63159
Commit
3be63159
authored
Jan 11, 2019
by
Piotr Gawron
Browse files
12.2.0~alpha.0 changelog
parent
3c2137ad
Pipeline
#8184
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CHANGELOG
View file @
3be63159
minerva
(
12.2.0
~
alpha
.0
)
stable
;
urgency
=
medium
*
Feature
:
url
GET
parameters
support
all
kind
of
search
and
selected
overlays
highlight
*
Feature
:
user
can
create
custom
logging
configuration
in
file
/
etc
/
minerva
/
log4j
.
properties
*
Feature
:
plugin
panel
in
admin
allows
to
configure
set
of
available
plugins
*
Feature
:
import
export
from
SBML
supports
RENDER
package
*
Feature
:
import
export
from
SBML
supports
MULTI
package
*
Feature
:
API
tool
providing
possibility
to
transform
different
types
of
file
formats
*
Feature
:
current
state
of
the
browsed
map
is
reflected
in
the
url
(
position
,
zoom
,
overlays
,
search
queries
,
etc
.)
*
Small
improvement
:
export
to
SBML
includes
unit
factors
*
Small
improvement
:
mesh
identifiers
are
resolved
to
meshb
.
nlm
.
nih
.
gov
urls
*
Small
improvement
:
genetics
information
allows
to
provide
information
about
modification
on
peptide
level
that
could
be
visualized
in
MolArt
*
Small
improvement
:
allow
to
control
the
background
and
font
color
of
areas
drawn
from
text
areas
in
CellDesigner
"layers"
*
Small
improvement
:
config
logo
location
is
relative
to
the
root
minerva
deployment
directory
*
Small
improvement
:
there
is
branding
minerva
logo
in
the
left
panel
*
Small
improvement
:
there
is
possibility
to
download
part
of
the
map
limited
to
set
of
reactions
/
elements
*
Small
improvement
:
allow
admin
to
configure
parameters
displayed
in
the
left
panel
*
Small
improvement
:
arrows
for
Transcription
Starting
Sites
looks
more
like
in
CellDesigner
*
Small
improvement
:
popup
window
appear
with
info
about
exceeding
max
number
of
search
results
when
necessary
*
Small
improvement
:
plugins
can
define
default
width
of
the
container
tab
*
Small
improvement
:
new
miriam
type
is
handled
:
ClinicalTrials
.
gov
*
Small
improvement
:
click
on
the
border
of
compartment
select
the
compartment
*
Small
improvement
:
there
is
max
size
of
the
map
in
configuration
panel
that
disables
upload
of
too
big
files
*
Small
improvement
:
hitting
enter
on
login
page
logs
in
the
user
(
no
need
to
click
on
the
login
button
)
*
Small
improvement
:
refresh
button
in
overlays
panel
(
useful
when
data
overlays
are
uploaded
separately
in
using
API
calls
)
*
Small
improvement
:
list
of
publications
is
downloadable
*
Small
improvement
:
export
of
reactions
support
filtering
by
reaction
type
*
Small
improvement
:
'BACK TO MAP'
link
is
available
only
when
guest
account
has
proper
access
level
*
Small
improvement
:
'REQUEST AN ACCOUNT'
link
is
available
only
the
contact
email
account
is
provided
*
Small
improvement
:
Plugin
API
allows
to
show
/
hide
data
overlays
*
Bug
fix
:
export
to
CellDesigner
align
inhibition
reaction
properly
*
Bug
fix
:
export
/
import
to
/
from
SBML
handles
Heterodimer
Association
reaction
properly
*
Small
improvement
:
export
to
SBML
includes
unit
factors
*
Feature
:
url
GET
parameters
support
all
kind
of
search
and
selected
overlays
highligh
*
Bug
fix
:
logo
doesn
't need to be square
* Bug fix: when clicking on a search link (in overview window), input in the
left tab was not modified
* Bug fix: in admin panel changing of genome version is blocking interface
until data about url is retrieved
* Bug fix: export of species inside complex into CellDesigner was causing
problems when reading the file in CellDesigner
* Bug fix: export to SBGN did not export compartments
* Bug fix: export of complex states to SBGN did not work
* Bug fix: type of the data overlay can be defined in the file content
(useful when uploading genetic variants)
* Bug fix: CLEAR button clears comment checkbox if necessary
-- Piotr Gawron <piotr.gawron@uni.lu> Fri, 11 Jan 2019 12:00:00 +0200
minerva (12.1.5) stable; urgency=medium
* Bug fix: Drugbank changed output format which crashed drug connector
* Bug fix: word wrapping fixed in overlay table for long overlay names
in Firefox browser
--
Piotr
Gawron
<
piotr
.
gawron
@
uni
.
lu
>
Fri
,
10
Jan
c
2019
14
:
00
:
00
+
0200
-- Piotr Gawron <piotr.gawron@uni.lu>
Thu
, 10 Jan 2019 14:00:00 +0200
minerva (12.1.4) stable; urgency=medium
* Bug fix: no check for limit on custom data overlays fixed
...
...
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