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Commit 12c9e790 authored by Piotr Gawron's avatar Piotr Gawron
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junit dependecy included properly

parent 4e175ff4
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CellDesigner-plugin/pom.xml
View file @ 12c9e790
......@@ -82,6 +82,13 @@
<version>${libsbml.version}</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
<scope>test</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
annotation/pom.xml
View file @ 12c9e790
......@@ -226,5 +226,12 @@
<scope>test</scope>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
<scope>test</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
commons/pom.xml
View file @ 12c9e790
......@@ -31,6 +31,13 @@
<version>${xercesImp.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
<scope>test</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
console/pom.xml
View file @ 12c9e790
......@@ -66,6 +66,13 @@
<version>${commons-cli.version}</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
<scope>test</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
converter-CellDesigner/pom.xml
View file @ 12c9e790
......@@ -40,6 +40,13 @@
<scope>test</scope>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
<scope>test</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
converter-SBGNML/pom.xml
View file @ 12c9e790
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
<version>1.0</version>
</parent>
<artifactId>converter-SBGNML</artifactId>
<build>
<plugins>
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<executions>
<execution>
<id>make-assembly</id> <!-- this is used for inheritance merges -->
<phase>package</phase> <!-- bind to the packaging phase -->
<goals>
<goal>single</goal>
</goals>
<configuration>
<descriptor>install.xml</descriptor>
<archive>
<manifest>
<mainClass>lcsb.mapviewer.converter.model.sbgnml.console.SbgnmlConsoleConverter</mainClass>
</manifest>
</archive>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
<repositories>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>lcsb.mapviewer</groupId>
<artifactId>parent</artifactId>
<version>1.0</version>
</parent>
<artifactId>converter-SBGNML</artifactId>
<build>
<plugins>
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<executions>
<execution>
<id>make-assembly</id> <!-- this is used for inheritance merges -->
<phase>package</phase> <!-- bind to the packaging phase -->
<goals>
<goal>single</goal>
</goals>
<configuration>
<descriptor>install.xml</descriptor>
<archive>
<manifest>
<mainClass>lcsb.mapviewer.converter.model.sbgnml.console.SbgnmlConsoleConverter</mainClass>
</manifest>
</archive>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
<repositories>
<repository>
<id>central</id>
<url>http://repo.maven.apache.org/maven2/</url>
<id>central</id>
<url>http://repo.maven.apache.org/maven2/</url>
</repository>
<repository>
<id>repo</id>
<releases>
<enabled>true</enabled>
<checksumPolicy>ignore</checksumPolicy>
</releases>
<snapshots>
<enabled>false</enabled>
</snapshots>
<url>file://${project.basedir}/repo</url>
<id>repo</id>
<releases>
<enabled>true</enabled>
<checksumPolicy>ignore</checksumPolicy>
</releases>
<snapshots>
<enabled>false</enabled>
</snapshots>
<url>file://${project.basedir}/repo</url>
</repository>
</repositories>
<dependencies>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
<version>1.0</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>persist</artifactId>
<version>1.0</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-CellDesigner</artifactId>
<version>1.0</version>
</dependency>
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-graphics</artifactId>
<version>1.0</version>
</dependency>
<dependency>
<groupId>xerces</groupId>
<artifactId>xercesImpl</artifactId>
<version>${xercesImp.version}</version>
<groupId>xerces</groupId>
<artifactId>xercesImpl</artifactId>
<version>${xercesImp.version}</version>
</dependency>
<dependency>
<groupId>org.sbgn</groupId>
<artifactId>libsbgn</artifactId>
<version>${libsbgn.version}</version>
<version>${libsbgn.version}</version>
</dependency>
<!-- Commons CLI by Apache -->
<!-- Commons CLI by Apache -->
<dependency>
<groupId>commons-cli</groupId>
<artifactId>commons-cli</artifactId>
<version>${commons-cli.version}</version>
<version>${commons-cli.version}</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
<scope>test</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
converter-graphics/pom.xml
View file @ 12c9e790
......@@ -94,6 +94,13 @@
<version>${itext.version}</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
<scope>test</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
converter-sbml/pom.xml
View file @ 12c9e790
......@@ -167,5 +167,12 @@
<scope>test</scope>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
<scope>test</scope>
</dependency>
</dependencies>
</project>
converter/pom.xml
View file @ 12c9e790
......@@ -29,6 +29,13 @@
<version>${mockito.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
<scope>test</scope>
</dependency>
</dependencies>
</project>
model-command/pom.xml
View file @ 12c9e790
......@@ -32,6 +32,14 @@
<artifactId>log4j</artifactId>
<version>${log4j.version}</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
<scope>test</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
model/pom.xml
View file @ 12c9e790
......@@ -87,5 +87,12 @@
<scope>test</scope>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
<scope>test</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
pathvisio/pom.xml
View file @ 12c9e790
......@@ -192,5 +192,13 @@
<artifactId>org.osgi.core</artifactId>
<version>${osgi.version}</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
<scope>test</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
persist/pom.xml
View file @ 12c9e790
......@@ -160,6 +160,12 @@
<scope>compile</scope>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
<scope>test</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
pom.xml
View file @ 12c9e790
<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>lcsb.mapviewer</groupId>
......@@ -29,7 +31,7 @@
<apache.poi.version>3.16</apache.poi.version>
<mockito.version>2.23.0</mockito.version>
<springframework.version>4.3.19.RELEASE</springframework.version>
<springframework.security.version>4.2.8.RELEASE</springframework.security.version>
<springframework.webflow.version>2.4.8.RELEASE</springframework.webflow.version>
......@@ -66,7 +68,7 @@
<cglib.version>3.2.8</cglib.version>
<gson.version>2.8.5</gson.version>
<rs-jax.version>1.1.1</rs-jax.version>
<jersey.version>1.19.4</jersey.version>
......@@ -79,33 +81,24 @@
<jsf.version>2.2.18</jsf.version>
<unboundid-ldapsdk.version>4.0.8</unboundid-ldapsdk.version>
<unboundid-ldapsdk.version>4.0.8</unboundid-ldapsdk.version>
<jstl.version>1.2</jstl.version>
<commons-fileupload.version>1.3.3</commons-fileupload.version>
<commons-validator.version>1.4.0</commons-validator.version>
<jsbml.version>1.4</jsbml.version>
<chebi-ws.version>2.4</chebi-ws.version>
<celldesigner.version>4.4</celldesigner.version>
<reflections.version>0.9.9-RC1</reflections.version>
<osgi.version>1.0.0</osgi.version>
<junit.version>4.12</junit.version>
</properties>
......@@ -120,7 +113,7 @@
<url>http://repository.primefaces.org</url>
</repository>
</repositories>
<modules>
<module>model</module>
<module>commons</module>
......@@ -140,11 +133,11 @@
<module>comparison</module>
<module>CellDesigner-plugin</module>
<module>editor</module>
<module>rest-api</module>
<module>frontend-js</module>
<module>converter-sbml</module>
</modules>
<module>rest-api</module>
<module>frontend-js</module>
<module>converter-sbml</module>
</modules>
<build>
<pluginManagement>
<plugins>
......@@ -158,33 +151,25 @@
</plugin>
</plugins>
</pluginManagement>
</build>
</build>
<reporting>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-report-plugin</artifactId>
<version>2.18.1</version>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-report-plugin</artifactId>
<version>2.18.1</version>
<configuration>
<aggregate>true</aggregate>
<redirectTestOutputToFile>true</redirectTestOutputToFile>
<aggregate>true</aggregate>
<redirectTestOutputToFile>true</redirectTestOutputToFile>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jxr-plugin</artifactId>
<version>2.3</version>
</plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jxr-plugin</artifactId>
<version>2.3</version>
</plugin>
</plugins>
</reporting>
<dependencies>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.12</version>
</dependency>
</dependencies>
</reporting>
</project>
\ No newline at end of file
quadTrees/pom.xml
View file @ 12c9e790
......@@ -14,6 +14,13 @@
<artifactId>log4j</artifactId>
<version>${log4j.version}</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
<scope>test</scope>
</dependency>
</dependencies>
......
reactome/pom.xml
View file @ 12c9e790
<project
xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>lcsb.mapviewer</groupId>
......@@ -14,51 +13,51 @@
<artifactId>reactome</artifactId>
<name>Reactome connector</name>
<description>Module used for compare data in reactome and local model</description>
<dependencies>
<!-- dependency from the MapViewer model -->
<!-- dependency from the MapViewer model -->
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>model</artifactId>
<version>1.0</version>
</dependency>
<!-- dependency from the MapViewer CellDesigner parser -->
<!-- dependency from the MapViewer CellDesigner parser -->
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>converter-CellDesigner</artifactId>
<version>1.0</version>
</dependency>
<!-- dependency from the MapViewer annotation -->
<!-- dependency from the MapViewer annotation -->
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>annotation</artifactId>
<version>1.0</version>
</dependency>
<!-- dependency from the MapViewer dao-->
<!-- dependency from the MapViewer dao -->
<dependency>
<groupId>lcsb.mapviewer</groupId>
<artifactId>persist</artifactId>
<version>1.0</version>
</dependency>
<!-- Log4J -->
<!-- Log4J -->
<dependency>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
<version>${log4j.version}</version>
</dependency>
<!-- Spring -->
<!-- Spring -->
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-core</artifactId>
<version>${springframework.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context</artifactId>
......@@ -71,13 +70,20 @@
<version>${springframework.version}</version>
</dependency>
<!-- spring module used for testing -->
<!-- spring module used for testing -->
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-test</artifactId>
<version>${springframework.version}</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
<scope>test</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
rest-api/pom.xml
View file @ 12c9e790
......@@ -82,6 +82,13 @@
<version>${mockito.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
<scope>test</scope>
</dependency>
</dependencies>
</project>
service/pom.xml
View file @ 12c9e790
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
http://maven.apache.org/xsd/maven-4.0.0.xsd">
......@@ -121,12 +122,12 @@
<!-- https://mvnrepository.com/artifact/com.unboundid/unboundid-ldapsdk -->
<dependency>
<groupId>com.unboundid</groupId>
<artifactId>unboundid-ldapsdk</artifactId>
<version>${unboundid-ldapsdk.version}</version>
<groupId>com.unboundid</groupId>
<artifactId>unboundid-ldapsdk</artifactId>
<version>${unboundid-ldapsdk.version}</version>
</dependency>
<!-- mockito used for testing -->
<!-- mockito used for testing -->
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-core</artifactId>
......@@ -134,6 +135,13 @@
<scope>test</scope>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
<scope>test</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file