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minerva
core
Commits
12c9e790
Commit
12c9e790
authored
Oct 16, 2018
by
Piotr Gawron
Browse files
junit dependecy included properly
parent
4e175ff4
Changes
18
Hide whitespace changes
Inline
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CellDesigner-plugin/pom.xml
View file @
12c9e790
...
...
@@ -82,6 +82,13 @@
<version>
${libsbml.version}
</version>
</dependency>
<dependency>
<groupId>
junit
</groupId>
<artifactId>
junit
</artifactId>
<version>
${junit.version}
</version>
<scope>
test
</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
annotation/pom.xml
View file @
12c9e790
...
...
@@ -226,5 +226,12 @@
<scope>
test
</scope>
</dependency>
<dependency>
<groupId>
junit
</groupId>
<artifactId>
junit
</artifactId>
<version>
${junit.version}
</version>
<scope>
test
</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
commons/pom.xml
View file @
12c9e790
...
...
@@ -31,6 +31,13 @@
<version>
${xercesImp.version}
</version>
<scope>
test
</scope>
</dependency>
<dependency>
<groupId>
junit
</groupId>
<artifactId>
junit
</artifactId>
<version>
${junit.version}
</version>
<scope>
test
</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
console/pom.xml
View file @
12c9e790
...
...
@@ -66,6 +66,13 @@
<version>
${commons-cli.version}
</version>
</dependency>
<dependency>
<groupId>
junit
</groupId>
<artifactId>
junit
</artifactId>
<version>
${junit.version}
</version>
<scope>
test
</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
converter-CellDesigner/pom.xml
View file @
12c9e790
...
...
@@ -40,6 +40,13 @@
<scope>
test
</scope>
</dependency>
<dependency>
<groupId>
junit
</groupId>
<artifactId>
junit
</artifactId>
<version>
${junit.version}
</version>
<scope>
test
</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
converter-SBGNML/pom.xml
View file @
12c9e790
<project
xmlns=
"http://maven.apache.org/POM/4.0.0"
xmlns:xsi=
"http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation=
"http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"
>
<modelVersion>
4.0.0
</modelVersion>
<parent>
<groupId>
lcsb.mapviewer
</groupId>
<artifactId>
parent
</artifactId>
<version>
1.0
</version>
</parent>
<artifactId>
converter-SBGNML
</artifactId>
<build>
<plugins>
<plugin>
<artifactId>
maven-assembly-plugin
</artifactId>
<executions>
<execution>
<id>
make-assembly
</id>
<!-- this is used for inheritance merges -->
<phase>
package
</phase>
<!-- bind to the packaging phase -->
<goals>
<goal>
single
</goal>
</goals>
<configuration>
<descriptor>
install.xml
</descriptor>
<archive>
<manifest>
<mainClass>
lcsb.mapviewer.converter.model.sbgnml.console.SbgnmlConsoleConverter
</mainClass>
</manifest>
</archive>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
<repositories>
<project
xmlns=
"http://maven.apache.org/POM/4.0.0"
xmlns:xsi=
"http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation=
"http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"
>
<modelVersion>
4.0.0
</modelVersion>
<parent>
<groupId>
lcsb.mapviewer
</groupId>
<artifactId>
parent
</artifactId>
<version>
1.0
</version>
</parent>
<artifactId>
converter-SBGNML
</artifactId>
<build>
<plugins>
<plugin>
<artifactId>
maven-assembly-plugin
</artifactId>
<executions>
<execution>
<id>
make-assembly
</id>
<!-- this is used for inheritance merges -->
<phase>
package
</phase>
<!-- bind to the packaging phase -->
<goals>
<goal>
single
</goal>
</goals>
<configuration>
<descriptor>
install.xml
</descriptor>
<archive>
<manifest>
<mainClass>
lcsb.mapviewer.converter.model.sbgnml.console.SbgnmlConsoleConverter
</mainClass>
</manifest>
</archive>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
<repositories>
<repository>
<id>
central
</id>
<url>
http://repo.maven.apache.org/maven2/
</url>
<id>
central
</id>
<url>
http://repo.maven.apache.org/maven2/
</url>
</repository>
<repository>
<id>
repo
</id>
<releases>
<enabled>
true
</enabled>
<checksumPolicy>
ignore
</checksumPolicy>
</releases>
<snapshots>
<enabled>
false
</enabled>
</snapshots>
<url>
file://${project.basedir}/repo
</url>
<id>
repo
</id>
<releases>
<enabled>
true
</enabled>
<checksumPolicy>
ignore
</checksumPolicy>
</releases>
<snapshots>
<enabled>
false
</enabled>
</snapshots>
<url>
file://${project.basedir}/repo
</url>
</repository>
</repositories>
<dependencies>
<dependency>
<groupId>
lcsb.mapviewer
</groupId>
<artifactId>
model
</artifactId>
<version>
1.0
</version>
</dependency>
<dependency>
<groupId>
lcsb.mapviewer
</groupId>
<artifactId>
persist
</artifactId>
<version>
1.0
</version>
<scope>
test
</scope>
</dependency>
<dependency>
<groupId>
lcsb.mapviewer
</groupId>
<artifactId>
converter-CellDesigner
</artifactId>
<version>
1.0
</version>
</dependency>
<dependency>
<groupId>
lcsb.mapviewer
</groupId>
<artifactId>
converter-graphics
</artifactId>
<version>
1.0
</version>
</dependency>
<dependency>
<groupId>
xerces
</groupId>
<artifactId>
xercesImpl
</artifactId>
<version>
${xercesImp.version}
</version>
<groupId>
xerces
</groupId>
<artifactId>
xercesImpl
</artifactId>
<version>
${xercesImp.version}
</version>
</dependency>
<dependency>
<groupId>
org.sbgn
</groupId>
<artifactId>
libsbgn
</artifactId>
<version>
${libsbgn.version}
</version>
<version>
${libsbgn.version}
</version>
</dependency>
<!-- Commons CLI by Apache -->
<!-- Commons CLI by Apache -->
<dependency>
<groupId>
commons-cli
</groupId>
<artifactId>
commons-cli
</artifactId>
<version>
${commons-cli.version}
</version>
<version>
${commons-cli.version}
</version>
</dependency>
<dependency>
<groupId>
junit
</groupId>
<artifactId>
junit
</artifactId>
<version>
${junit.version}
</version>
<scope>
test
</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
converter-graphics/pom.xml
View file @
12c9e790
...
...
@@ -94,6 +94,13 @@
<version>
${itext.version}
</version>
</dependency>
<dependency>
<groupId>
junit
</groupId>
<artifactId>
junit
</artifactId>
<version>
${junit.version}
</version>
<scope>
test
</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
converter-sbml/pom.xml
View file @
12c9e790
...
...
@@ -167,5 +167,12 @@
<scope>
test
</scope>
</dependency>
<dependency>
<groupId>
junit
</groupId>
<artifactId>
junit
</artifactId>
<version>
${junit.version}
</version>
<scope>
test
</scope>
</dependency>
</dependencies>
</project>
converter/pom.xml
View file @
12c9e790
...
...
@@ -29,6 +29,13 @@
<version>
${mockito.version}
</version>
<scope>
test
</scope>
</dependency>
<dependency>
<groupId>
junit
</groupId>
<artifactId>
junit
</artifactId>
<version>
${junit.version}
</version>
<scope>
test
</scope>
</dependency>
</dependencies>
</project>
model-command/pom.xml
View file @
12c9e790
...
...
@@ -32,6 +32,14 @@
<artifactId>
log4j
</artifactId>
<version>
${log4j.version}
</version>
</dependency>
<dependency>
<groupId>
junit
</groupId>
<artifactId>
junit
</artifactId>
<version>
${junit.version}
</version>
<scope>
test
</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
model/pom.xml
View file @
12c9e790
...
...
@@ -87,5 +87,12 @@
<scope>
test
</scope>
</dependency>
<dependency>
<groupId>
junit
</groupId>
<artifactId>
junit
</artifactId>
<version>
${junit.version}
</version>
<scope>
test
</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
pathvisio/pom.xml
View file @
12c9e790
...
...
@@ -192,5 +192,13 @@
<artifactId>
org.osgi.core
</artifactId>
<version>
${osgi.version}
</version>
</dependency>
<dependency>
<groupId>
junit
</groupId>
<artifactId>
junit
</artifactId>
<version>
${junit.version}
</version>
<scope>
test
</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
persist/pom.xml
View file @
12c9e790
...
...
@@ -160,6 +160,12 @@
<scope>
compile
</scope>
</dependency>
<dependency>
<groupId>
junit
</groupId>
<artifactId>
junit
</artifactId>
<version>
${junit.version}
</version>
<scope>
test
</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
pom.xml
View file @
12c9e790
<?xml version="1.0" encoding="UTF-8"?>
<project
xmlns=
"http://maven.apache.org/POM/4.0.0"
xmlns:xsi=
"http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation=
"http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"
>
<project
xmlns=
"http://maven.apache.org/POM/4.0.0"
xmlns:xsi=
"http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation=
"http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"
>
<modelVersion>
4.0.0
</modelVersion>
<groupId>
lcsb.mapviewer
</groupId>
...
...
@@ -29,7 +31,7 @@
<apache.poi.version>
3.16
</apache.poi.version>
<mockito.version>
2.23.0
</mockito.version>
<springframework.version>
4.3.19.RELEASE
</springframework.version>
<springframework.security.version>
4.2.8.RELEASE
</springframework.security.version>
<springframework.webflow.version>
2.4.8.RELEASE
</springframework.webflow.version>
...
...
@@ -66,7 +68,7 @@
<cglib.version>
3.2.8
</cglib.version>
<gson.version>
2.8.5
</gson.version>
<rs-jax.version>
1.1.1
</rs-jax.version>
<jersey.version>
1.19.4
</jersey.version>
...
...
@@ -79,33 +81,24 @@
<jsf.version>
2.2.18
</jsf.version>
<unboundid-ldapsdk.version>
4.0.8
</unboundid-ldapsdk.version>
<unboundid-ldapsdk.version>
4.0.8
</unboundid-ldapsdk.version>
<jstl.version>
1.2
</jstl.version>
<commons-fileupload.version>
1.3.3
</commons-fileupload.version>
<commons-validator.version>
1.4.0
</commons-validator.version>
<jsbml.version>
1.4
</jsbml.version>
<chebi-ws.version>
2.4
</chebi-ws.version>
<celldesigner.version>
4.4
</celldesigner.version>
<reflections.version>
0.9.9-RC1
</reflections.version>
<osgi.version>
1.0.0
</osgi.version>
<junit.version>
4.12
</junit.version>
</properties>
...
...
@@ -120,7 +113,7 @@
<url>
http://repository.primefaces.org
</url>
</repository>
</repositories>
<modules>
<module>
model
</module>
<module>
commons
</module>
...
...
@@ -140,11 +133,11 @@
<module>
comparison
</module>
<module>
CellDesigner-plugin
</module>
<module>
editor
</module>
<module>
rest-api
</module>
<module>
frontend-js
</module>
<module>
converter-sbml
</module>
</modules>
<module>
rest-api
</module>
<module>
frontend-js
</module>
<module>
converter-sbml
</module>
</modules>
<build>
<pluginManagement>
<plugins>
...
...
@@ -158,33 +151,25 @@
</plugin>
</plugins>
</pluginManagement>
</build>
</build>
<reporting>
<plugins>
<plugin>
<groupId>
org.apache.maven.plugins
</groupId>
<artifactId>
maven-surefire-report-plugin
</artifactId>
<version>
2.18.1
</version>
<plugins>
<plugin>
<groupId>
org.apache.maven.plugins
</groupId>
<artifactId>
maven-surefire-report-plugin
</artifactId>
<version>
2.18.1
</version>
<configuration>
<aggregate>
true
</aggregate>
<redirectTestOutputToFile>
true
</redirectTestOutputToFile>
<aggregate>
true
</aggregate>
<redirectTestOutputToFile>
true
</redirectTestOutputToFile>
</configuration>
</plugin>
<plugin>
<groupId>
org.apache.maven.plugins
</groupId>
<artifactId>
maven-jxr-plugin
</artifactId>
<version>
2.3
</version>
</plugin>
<groupId>
org.apache.maven.plugins
</groupId>
<artifactId>
maven-jxr-plugin
</artifactId>
<version>
2.3
</version>
</plugin>
</plugins>
</reporting>
<dependencies>
<dependency>
<groupId>
junit
</groupId>
<artifactId>
junit
</artifactId>
<version>
4.12
</version>
</dependency>
</dependencies>
</reporting>
</project>
\ No newline at end of file
quadTrees/pom.xml
View file @
12c9e790
...
...
@@ -14,6 +14,13 @@
<artifactId>
log4j
</artifactId>
<version>
${log4j.version}
</version>
</dependency>
<dependency>
<groupId>
junit
</groupId>
<artifactId>
junit
</artifactId>
<version>
${junit.version}
</version>
<scope>
test
</scope>
</dependency>
</dependencies>
...
...
reactome/pom.xml
View file @
12c9e790
<project
xmlns=
"http://maven.apache.org/POM/4.0.0"
xmlns:xsi=
"http://www.w3.org/2001/XMLSchema-instance"
<project
xmlns=
"http://maven.apache.org/POM/4.0.0"
xmlns:xsi=
"http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation=
"http://maven.apache.org/POM/4.0.0
http://maven.apache.org/xsd/maven-4.0.0.xsd"
>
<modelVersion>
4.0.0
</modelVersion>
<parent>
<groupId>
lcsb.mapviewer
</groupId>
...
...
@@ -14,51 +13,51 @@
<artifactId>
reactome
</artifactId>
<name>
Reactome connector
</name>
<description>
Module used for compare data in reactome and local model
</description>
<dependencies>
<!-- dependency from the MapViewer model -->
<!-- dependency from the MapViewer model -->
<dependency>
<groupId>
lcsb.mapviewer
</groupId>
<artifactId>
model
</artifactId>
<version>
1.0
</version>
</dependency>
<!-- dependency from the MapViewer CellDesigner parser -->
<!-- dependency from the MapViewer CellDesigner parser -->
<dependency>
<groupId>
lcsb.mapviewer
</groupId>
<artifactId>
converter-CellDesigner
</artifactId>
<version>
1.0
</version>
</dependency>
<!-- dependency from the MapViewer annotation -->
<!-- dependency from the MapViewer annotation -->
<dependency>
<groupId>
lcsb.mapviewer
</groupId>
<artifactId>
annotation
</artifactId>
<version>
1.0
</version>
</dependency>
<!-- dependency from the MapViewer dao-->
<!-- dependency from the MapViewer dao
-->
<dependency>
<groupId>
lcsb.mapviewer
</groupId>
<artifactId>
persist
</artifactId>
<version>
1.0
</version>
</dependency>
<!-- Log4J -->
<!-- Log4J -->
<dependency>
<groupId>
log4j
</groupId>
<artifactId>
log4j
</artifactId>
<version>
${log4j.version}
</version>
</dependency>
<!-- Spring -->
<!-- Spring -->
<dependency>
<groupId>
org.springframework
</groupId>
<artifactId>
spring-core
</artifactId>
<version>
${springframework.version}
</version>
</dependency>
<dependency>
<groupId>
org.springframework
</groupId>
<artifactId>
spring-context
</artifactId>
...
...
@@ -71,13 +70,20 @@
<version>
${springframework.version}
</version>
</dependency>
<!-- spring module used for testing -->
<!-- spring module used for testing -->
<dependency>
<groupId>
org.springframework
</groupId>
<artifactId>
spring-test
</artifactId>
<version>
${springframework.version}
</version>
</dependency>
<dependency>
<groupId>
junit
</groupId>
<artifactId>
junit
</artifactId>
<version>
${junit.version}
</version>
<scope>
test
</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
rest-api/pom.xml
View file @
12c9e790
...
...
@@ -82,6 +82,13 @@
<version>
${mockito.version}
</version>
<scope>
test
</scope>
</dependency>
<dependency>
<groupId>
junit
</groupId>
<artifactId>
junit
</artifactId>
<version>
${junit.version}
</version>
<scope>
test
</scope>
</dependency>
</dependencies>
</project>
service/pom.xml
View file @
12c9e790
<project
xmlns=
"http://maven.apache.org/POM/4.0.0"
xmlns:xsi=
"http://www.w3.org/2001/XMLSchema-instance"
<project
xmlns=
"http://maven.apache.org/POM/4.0.0"
xmlns:xsi=
"http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation=
"http://maven.apache.org/POM/4.0.0
http://maven.apache.org/xsd/maven-4.0.0.xsd"
>
...
...
@@ -121,12 +122,12 @@
<!-- https://mvnrepository.com/artifact/com.unboundid/unboundid-ldapsdk -->
<dependency>
<groupId>
com.unboundid
</groupId>
<artifactId>
unboundid-ldapsdk
</artifactId>
<version>
${unboundid-ldapsdk.version}
</version>
<groupId>
com.unboundid
</groupId>
<artifactId>
unboundid-ldapsdk
</artifactId>
<version>
${unboundid-ldapsdk.version}
</version>
</dependency>
<!-- mockito used for testing -->
<!-- mockito used for testing -->
<dependency>
<groupId>
org.mockito
</groupId>
<artifactId>
mockito-core
</artifactId>
...
...
@@ -134,6 +135,13 @@
<scope>
test
</scope>
</dependency>
<dependency>
<groupId>
junit
</groupId>
<artifactId>
junit
</artifactId>
<version>
${junit.version}
</version>
<scope>
test
</scope>
</dependency>
</dependencies>
</project>
\ No newline at end of file
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