Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Sign in
Toggle navigation
Menu
Open sidebar
LCSB-BioCore
COBREXA.jl
Commits
373e6b39
Unverified
Commit
373e6b39
authored
May 11, 2021
by
Laurent Heirendt
✈
Committed by
GitHub
May 11, 2021
Browse files
Merge pull request #242 from LCSB-BioCore/mk-test-kill-deps
parents
ef980f3d
87e9b96b
Changes
3
Hide whitespace changes
Inline
Side-by-side
Project.toml
View file @
373e6b39
...
...
@@ -4,43 +4,47 @@ authors = ["The developers of COBREXA.jl"]
version
=
"1.0.0"
[deps]
Clp
=
"e2554f3b-3117-50c0-817c-e040a3ddf72d"
Dates
=
"ade2ca70-3891-5945-98fb-dc099432e06a"
DelimitedFiles
=
"8bb1440f-4735-579b-a4ab-409b98df4dab"
Distributed
=
"8ba89e20-285c-5b6f-9357-94700520ee1b"
DistributedData
=
"f6a0035f-c5ac-4ad0-b410-ad102ced35df"
Documenter
=
"e30172f5-a6a5-5a46-863b-614d45cd2de4"
Downloads
=
"f43a241f-c20a-4ad4-852c-f6b1247861c6"
GLPK
=
"60bf3e95-4087-53dc-ae20-288a0d20c6a6"
HDF5
=
"f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f"
JSON
=
"682c06a0-de6a-54ab-a142-c8b1cf79cde6"
JuMP
=
"4076af6c-e467-56ae-b986-b466b2749572"
JuliaFormatter
=
"98e50ef6-434e-11e9-1051-2b60c6c9e899"
LinearAlgebra
=
"37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
Logging
=
"56ddb016-857b-54e1-b83d-db4d58db5568"
MAT
=
"23992714-dd62-5051-b70f-ba57cb901cac"
MacroTools
=
"1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
Measurements
=
"eff96d63-e80a-5855-80a2-b1b0885c5ab7"
OSQP
=
"ab2f91bb-94b4-55e3-9ba0-7f65df51de79"
OrderedCollections
=
"bac558e1-5e72-5ebc-8fee-abe8a469f55d"
Pkg
=
"44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
Random
=
"9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
Requires
=
"ae029012-a4dd-5104-9daa-d747884805df"
Revise
=
"295af30f-e4ad-537b-8983-00126c2a3abe"
SBML
=
"e5567a89-2604-4b09-9718-f5f78e97c3bb"
SBML_jll
=
"bb12108a-f4ef-5f88-8ef3-0b33ff7017f1"
SHA
=
"ea8e919c-243c-51af-8825-aaa63cd721ce"
SparseArrays
=
"2f01184e-e22b-5df5-ae63-d93ebab69eaf"
Statistics
=
"10745b16-79ce-11e8-11f9-7d13ad32a3b2"
[compat]
DistributedData
=
">
=
0.1
.
3
"
SBML
=
">
=
0.4
"
Clp
=
"0.8"
DistributedData
=
"0.1.3"
Documenter
=
"0.26"
GLPK
=
"0.14"
JSON
=
"0.21"
JuMP
=
"0.21"
Literate
=
"2.8"
MAT
=
"0.10"
MacroTools
=
"0.5.6"
OSQP
=
"0.6"
OrderedCollections
=
"1.4"
SBML
=
"0.4"
Tulip
=
"0.7"
julia
=
"1"
[extras]
Clp
=
"e2554f3b-3117-50c0-817c-e040a3ddf72d"
Documenter
=
"e30172f5-a6a5-5a46-863b-614d45cd2de4"
Downloads
=
"f43a241f-c20a-4ad4-852c-f6b1247861c6"
GLPK
=
"60bf3e95-4087-53dc-ae20-288a0d20c6a6"
Literate
=
"98b081ad-f1c9-55d3-8b20-4c87d4299306"
OSQP
=
"ab2f91bb-94b4-55e3-9ba0-7f65df51de79"
SHA
=
"ea8e919c-243c-51af-8825-aaa63cd721ce"
Test
=
"8dfed614-e22c-5e08-85e1-65c5234f0b40"
Tulip
=
"6dd1b50a-3aae-11e9-10b5-ef983d2400fa"
[targets]
test
=
[
"Test"
,
"Tulip"
]
test
=
[
"Clp"
,
"Downloads"
,
"GLPK"
,
"OSQP"
,
"SHA"
,
"Test"
,
"Tulip"
]
src/COBREXA.jl
View file @
373e6b39
module
COBREXA
using
Logging
using
SparseArrays
using
DelimitedFiles
using
LinearAlgebra
using
JuMP
using
MAT
using
Dates
using
Distributed
using
DistributedData
using
Downloads
using
Requires
using
JSON
using
JuMP
using
LinearAlgebra
using
MAT
using
MacroTools
using
Measurements
using
Statistics
using
Random
using
MacroTools
# for DSL :)
using
OrderedCollections
using
Dates
using
Random
using
SparseArrays
using
Statistics
import
Base
:
findfirst
,
getindex
,
show
import
Pkg
...
...
test/runtests.jl
View file @
373e6b39
using
Test
using
Logging
using
SparseArrays
using
JuMP
using
GLPK
using
COBREXA
,
Test
using
Clp
using
COBREXA
using
MAT
using
SHA
using
Distributed
using
Downloads
using
GLPK
using
JSON
using
JuMP
using
Tulip
using
LinearAlgebra
using
MAT
using
OrderedCollections
using
OSQP
using
SHA
using
SparseArrays
using
Statistics
using
JSON
using
Measurements
using
OrderedCollections
using
LinearAlgebra
using
Tulip
# tolerance for comparing analysis results (should be a bit bigger than the
# error tolerance in computations)
...
...
@@ -47,7 +45,7 @@ function download_data_file(url, path, hash)
return
path
end
COBREXA
.
Downloads
.
download
(
url
,
path
)
Downloads
.
download
(
url
,
path
)
check_data_file_hash
(
path
,
hash
)
return
path
end
...
...
cylon-x
🤖
@cylon-x
mentioned in commit
1da003b2
·
Jun 02, 2021
mentioned in commit
1da003b2
mentioned in commit 1da003b205e03b0f95ac0dc626b60f3433aecc2d
Toggle commit list
cylon-x
🤖
@cylon-x
mentioned in commit
3d885a7f
·
Jul 08, 2021
mentioned in commit
3d885a7f
mentioned in commit 3d885a7f630a2c68a8cb53e1520f17526f6ae08b
Toggle commit list
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment