Unverified Commit 373e6b39 authored by Laurent Heirendt's avatar Laurent Heirendt Committed by GitHub
Browse files

Merge pull request #242 from LCSB-BioCore/mk-test-kill-deps

parents ef980f3d 87e9b96b
...@@ -4,43 +4,47 @@ authors = ["The developers of COBREXA.jl"] ...@@ -4,43 +4,47 @@ authors = ["The developers of COBREXA.jl"]
version = "1.0.0" version = "1.0.0"
[deps] [deps]
Clp = "e2554f3b-3117-50c0-817c-e040a3ddf72d"
Dates = "ade2ca70-3891-5945-98fb-dc099432e06a" Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
DelimitedFiles = "8bb1440f-4735-579b-a4ab-409b98df4dab"
Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b" Distributed = "8ba89e20-285c-5b6f-9357-94700520ee1b"
DistributedData = "f6a0035f-c5ac-4ad0-b410-ad102ced35df" DistributedData = "f6a0035f-c5ac-4ad0-b410-ad102ced35df"
Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
Downloads = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
GLPK = "60bf3e95-4087-53dc-ae20-288a0d20c6a6"
HDF5 = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f"
JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
JuMP = "4076af6c-e467-56ae-b986-b466b2749572" JuMP = "4076af6c-e467-56ae-b986-b466b2749572"
JuliaFormatter = "98e50ef6-434e-11e9-1051-2b60c6c9e899"
LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
Logging = "56ddb016-857b-54e1-b83d-db4d58db5568"
MAT = "23992714-dd62-5051-b70f-ba57cb901cac" MAT = "23992714-dd62-5051-b70f-ba57cb901cac"
MacroTools = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" MacroTools = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7"
OSQP = "ab2f91bb-94b4-55e3-9ba0-7f65df51de79"
OrderedCollections = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" OrderedCollections = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
Requires = "ae029012-a4dd-5104-9daa-d747884805df"
Revise = "295af30f-e4ad-537b-8983-00126c2a3abe"
SBML = "e5567a89-2604-4b09-9718-f5f78e97c3bb" SBML = "e5567a89-2604-4b09-9718-f5f78e97c3bb"
SBML_jll = "bb12108a-f4ef-5f88-8ef3-0b33ff7017f1"
SHA = "ea8e919c-243c-51af-8825-aaa63cd721ce"
SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
[compat] [compat]
DistributedData = ">=0.1.3" Clp = "0.8"
SBML = ">=0.4" DistributedData = "0.1.3"
Documenter = "0.26"
GLPK = "0.14"
JSON = "0.21"
JuMP = "0.21"
Literate = "2.8"
MAT = "0.10"
MacroTools = "0.5.6"
OSQP = "0.6"
OrderedCollections = "1.4"
SBML = "0.4"
Tulip = "0.7"
julia = "1" julia = "1"
[extras] [extras]
Clp = "e2554f3b-3117-50c0-817c-e040a3ddf72d"
Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
Downloads = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
GLPK = "60bf3e95-4087-53dc-ae20-288a0d20c6a6"
Literate = "98b081ad-f1c9-55d3-8b20-4c87d4299306"
OSQP = "ab2f91bb-94b4-55e3-9ba0-7f65df51de79"
SHA = "ea8e919c-243c-51af-8825-aaa63cd721ce"
Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
Tulip = "6dd1b50a-3aae-11e9-10b5-ef983d2400fa" Tulip = "6dd1b50a-3aae-11e9-10b5-ef983d2400fa"
[targets] [targets]
test = ["Test", "Tulip"] test = ["Clp", "Downloads", "GLPK", "OSQP", "SHA", "Test", "Tulip"]
module COBREXA module COBREXA
using Logging using Dates
using SparseArrays
using DelimitedFiles
using LinearAlgebra
using JuMP
using MAT
using Distributed using Distributed
using DistributedData using DistributedData
using Downloads
using Requires
using JSON using JSON
using JuMP
using LinearAlgebra
using MAT
using MacroTools using MacroTools
using Measurements
using Statistics
using Random
using MacroTools # for DSL :)
using OrderedCollections using OrderedCollections
using Dates using Random
using SparseArrays
using Statistics
import Base: findfirst, getindex, show import Base: findfirst, getindex, show
import Pkg import Pkg
......
using Test using COBREXA, Test
using Logging
using SparseArrays
using JuMP
using GLPK
using Clp using Clp
using COBREXA
using MAT
using SHA
using Distributed using Distributed
using Downloads
using GLPK
using JSON
using JuMP using JuMP
using Tulip using LinearAlgebra
using MAT
using OrderedCollections
using OSQP using OSQP
using SHA
using SparseArrays
using Statistics using Statistics
using JSON using Tulip
using Measurements
using OrderedCollections
using LinearAlgebra
# tolerance for comparing analysis results (should be a bit bigger than the # tolerance for comparing analysis results (should be a bit bigger than the
# error tolerance in computations) # error tolerance in computations)
...@@ -47,7 +45,7 @@ function download_data_file(url, path, hash) ...@@ -47,7 +45,7 @@ function download_data_file(url, path, hash)
return path return path
end end
COBREXA.Downloads.download(url, path) Downloads.download(url, path)
check_data_file_hash(path, hash) check_data_file_hash(path, hash)
return path return path
end end
......
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