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  • Laura Denies
  • PathoFact
  • Issues
  • #73
Closed
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Issue created May 28, 2021 by Xuanji Li@xuanji2017

only small fasta files (around 6000~7000 contigs) can work in Vir and Tox module

Dear Developer The test file you offered in PathoFact can work. but when I run my own input metagenomic sample (with 2.5M contigs), it always gives me errors. So I tried to split the sample into a couple of small files. I found only small files with < 6000-7000 contigs can work. The error seems to be from signalp (as below), but when I run my big contig sample by signal separately, it can work. So really weird. Do you have any ideas on how to solve this? because I have >600 metagenomics samples. Thanks

LS4XC95SSCWDNCXZ9A185ZK

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