Unclassified MGE
Hi,
Is it possible to know a bit more of how are classified MGEs. I saw the cutoff for PlasFlow but what about the one for phage? I have increased the PlasFlow cutoff to 0.9 as I have env metagenomic data but I have now a huge proportion of unclassified. When you tested PathoFact, did you also observe a large proportion of unclassified? Thanks for your help, Nico