GitLab

Hello,

Thank you for this nice tool. I have run the testing modules, but it fails at the DeepARG step, and it fails completely afterward.

Here is the logfile associated with DeepARG (group_1.out.mapping.ARG):

/mnt/d/Metagenomics_trial/PathoFact/.snakemake/conda/e658ef70/lib/python2.7/site-packages/theano/tensor/signal/downsample.py:6: UserWarning: downsample module has been moved to the theano.tensor.signal.pool module. "downsample module has been moved to the theano.tensor.signal.pool module.") /mnt/d/Metagenomics_trial/PathoFact/.snakemake/conda/e658ef70/lib/python2.7/site-packages/sklearn/cross_validation.py:41: DeprecationWarning: This module was deprecated in version 0.18 in favor of the model_selection module into which all the refactored classes and functions are moved. Also note that the interface of the new CV iterators are different from that of this module. This module will be removed in 0.20. "This module will be removed in 0.20.", DeprecationWarning) Traceback (most recent call last): File "/mnt/d/Metagenomics_trial/PathoFact/.snakemake/conda/e658ef70/bin/deeparg", line 5, in from deeparg.entry import main File "/mnt/d/Metagenomics_trial/PathoFact/.snakemake/conda/e658ef70/lib/python2.7/site-packages/deeparg/entry.py", line 10, in import deeparg.predict.bin.deepARG as clf File "/mnt/d/Metagenomics_trial/PathoFact/.snakemake/conda/e658ef70/lib/python2.7/site-packages/deeparg/predict/bin/deepARG.py", line 21, in from deeparg.predict.bin import process_blast File "/mnt/d/Metagenomics_trial/PathoFact/.snakemake/conda/e658ef70/lib/python2.7/site-packages/deeparg/predict/bin/deeparg.py", line 21, in from deeparg.predict.bin import process_blast ImportError: No module named predict.bin