spring-clean: DeepARG

Dependency: DeepARG

• git submodule
• rm dir. in scripts/
• rm git clone from set-up.sh
• update path in config.yaml
• set-up commands: replace path and make DIAMOND bin executable

git lfs install # if not already done
git submodule add https://gaarangoa@bitbucket.org/gusphdproj/deeparg-ss.git submodules/deeparg-ss
cd submodules/deeparg-ss/
git checkout 14b8dce

Impact: Could affect the results if there are any discrepancies between the versions of any dependency. Therefore:

• Confirm git version
• Use same YAML as in original repo