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Constraint-Based Reconstruction and EXascale Analysis

STAR and DESeq2

All-in-one pandoc-based static site builder with tags and stuff

An automated workflow for constructing maps of molecular mechanisms for given diseases. It streamlines querying gene-disease and variant-disease associations, calculating enrichment of disease maps and pathways, and combining enriched diagrams with text mining data into a single map, meant for the MINERVA Platform.

ggplot+latex docker image

scripts for ZOTERO .bib generation

Software development guidelines for handling sensitive data in HPC (à la carte approach)

Huge-scale, high-performance flow cytometry clustering in Julia