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Commit e8540eac authored by Todor Kondic's avatar Todor Kondic
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Fix docs

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R/mix.R
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...@@ -131,7 +131,7 @@ single.sw<-function(fn_data,stgs_alist,wd,fn_cmpd_list,mode,readMethod="mzR",arc ...@@ -131,7 +131,7 @@ single.sw<-function(fn_data,stgs_alist,wd,fn_cmpd_list,mode,readMethod="mzR",arc
w <- RMassBank::newMsmsWorkspace() w <- RMassBank::newMsmsWorkspace()
## Run the workflow. ## Run the workflow.
message(paste("Reading in file:",fn_data)) message(paste("Reading in file:",fn_data))
w <-msmsRead(w,filetable=fn_table,readMethod="mzR",mode=mode) w <-RMassBank::msmsRead(w,filetable=fn_table,readMethod="mzR",mode=mode)
archdir<-file.path(wd,archdir) archdir<-file.path(wd,archdir)
if (!dir.exists(archdir)) dir.create(archdir) if (!dir.exists(archdir)) dir.create(archdir)
fn_arch<-file.path(archdir,paste(fn_data,".archive",sep='')) fn_arch<-file.path(archdir,paste(fn_data,".archive",sep=''))
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