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Environmental Cheminformatics
shinyscreen
Commits
b8c24585
Commit
b8c24585
authored
2 years ago
by
Todor Kondic
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Fixing feedback.
parent
d771ae93
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2 changed files
R/shiny-state.R
+53
-0
53 additions, 0 deletions
R/shiny-state.R
R/shiny-ui-base.R
+1
-46
1 addition, 46 deletions
R/shiny-ui-base.R
with
54 additions
and
46 deletions
R/shiny-state.R
+
53
−
0
View file @
b8c24585
...
@@ -388,3 +388,56 @@ gen_cindex <- function(summ,sorder,cols = CINDEX_COLS,by. = CINDEX_BY) {
...
@@ -388,3 +388,56 @@ gen_cindex <- function(summ,sorder,cols = CINDEX_COLS,by. = CINDEX_BY) {
setnames
(
res
,
old
=
"rt"
,
new
=
"rt(ms1)"
)
setnames
(
res
,
old
=
"rt"
,
new
=
"rt(ms1)"
)
res
res
}
}
get_cindex_parents
<-
function
(
summ
,
ckey
,
kvals
,
labs
)
{
## Get kvals part of summ.
tab
<-
get_data_from_key
(
summ
,
kvals
)[,
unique
(
.SD
),
.SDcols
=
labs
,
by
=
key
]
tab
[,
item
:=
do.call
(
paste
,
c
(
.SD
,
list
(
sep
=
";"
))),
.SDcol
=
labs
]
keys
<-
names
(
tab
)[
names
(
tab
)
!=
"item"
]
data.table
::
setkeyv
(
tab
,
keys
)
tab
}
update_on_commit_chg
<-
function
(
summ
,
input
,
ptab
,
ltab
)
{
n_ms1_rt
=
input
$
chg_ms1_rt
n_ms1_int
=
input
$
chg_ms1_int
n_qa
=
rep
(
F
,
length
(
QABOX_VALS
))
names
(
n_qa
)
=
QABOX_VALS
n_qa
[
input
$
qabox
]
=
T
n_ms2_sel
=
input
$
chg_ms2sel
sel_par
<-
input
$
sel_parent_trace
sel_spec
<-
input
$
sel_spec
ptab
<-
req
(
rf_get_cindex_parents
())
ltab
<-
req
(
rf_fill_sel_spec
())
pkvals
<-
ptab
[
item
==
(
sel_par
),
.SD
,
.SDcols
=
intersect
(
SUMM_KEY
,
names
(
ptab
))]
lkvals
<-
ltab
[
item
==
(
sel_spec
),
.SD
,
.SDcols
=
intersect
(
SUMM_KEY
,
names
(
ltab
))]
kvals
<-
c
(
as.list
(
pkvals
),
as.list
(
lkvals
))
kvals
<-
kvals
[
unique
(
names
(
kvals
))]
if
(
'an'
%in%
names
(
kvals
))
{
rkvals
<-
kvals
[
!
(
names
(
kvals
)
%in%
'an'
)]
rktab
<-
tabkey
(
summ
,
kvals
=
rkvals
)
tabsel
<-
summ
[
rktab
,
.
(
an
,
ms2_sel
)]
ansel
<-
tabsel
[
ms2_sel
==
T
,
an
]
print
(
'ansel'
)
print
(
ansel
)
if
(
length
(
ansel
)
!=
0
)
{
rktab
$
an
=
ansel
summ
[
rktab
,
ms2_sel
:=
F
]
}
}
## TODO: CHECK IF THIS WORKS!!!!! ESPECIALLY THE ABOVE AN TREATMENT.
tgts
<-
c
(
"ms1_rt"
,
"ms1_int"
,
names
(
n_qa
),
"ms2_sel"
)
srcs
<-
c
(
list
(
n_ms1_rt
,
n_ms1_int
),
as.list
(
n_qa
),
as.list
(
n_ms2_sel
))
summ
[
tabkey
(
summ
,
kvals
=
kvals
),(
tgts
)
:=
..srcs
]
summ
}
This diff is collapsed.
Click to expand it.
R/shiny-ui-base.R
+
1
−
46
View file @
b8c24585
...
@@ -780,12 +780,7 @@ mk_shinyscreen_server <- function(projects,init) {
...
@@ -780,12 +780,7 @@ mk_shinyscreen_server <- function(projects,init) {
key
<-
rf_get_cindex_key
()
key
<-
rf_get_cindex_key
()
kvals
<-
req
(
rf_get_cindex_kval
())
kvals
<-
req
(
rf_get_cindex_kval
())
labs
<-
rf_get_cindex_labs
()
labs
<-
rf_get_cindex_labs
()
## Get kvals part of summ.
get_cindex_parents
(
summ
,
key
,
kvals
,
labs
)
tab
<-
get_data_from_key
(
summ
,
kvals
)[,
unique
(
.SD
),
.SDcols
=
labs
,
by
=
key
]
tab
[,
item
:=
do.call
(
paste
,
c
(
.SD
,
list
(
sep
=
";"
))),
.SDcol
=
labs
]
keys
<-
names
(
tab
)[
names
(
tab
)
!=
"item"
]
data.table
::
setkeyv
(
tab
,
keys
)
tab
})
})
...
@@ -1359,46 +1354,6 @@ mk_shinyscreen_server <- function(projects,init) {
...
@@ -1359,46 +1354,6 @@ mk_shinyscreen_server <- function(projects,init) {
})
})
observeEvent
(
input
$
cmt_changes_b
,{
observeEvent
(
input
$
cmt_changes_b
,{
n_ms1_rt
=
input
$
chg_ms1_rt
n_ms1_int
=
input
$
chg_ms1_int
n_qa
=
rep
(
F
,
length
(
QABOX_VALS
))
names
(
n_qa
)
=
QABOX_VALS
n_qa
[
input
$
qabox
]
=
T
n_ms2_sel
=
input
$
chg_ms2sel
sel_par
<-
input
$
sel_parent_trace
sel_spec
<-
input
$
sel_spec
ptab
<-
req
(
rf_get_cindex_parents
())
ltab
<-
req
(
rf_fill_sel_spec
())
pkvals
<-
ptab
[
item
==
(
sel_par
),
.SD
,
.SDcols
=
intersect
(
SUMM_KEY
,
names
(
ptab
))]
lkvals
<-
ltab
[
item
==
(
sel_spec
),
.SD
,
.SDcols
=
intersect
(
SUMM_KEY
,
names
(
ltab
))]
kvals
<-
c
(
as.list
(
pkvals
),
as.list
(
lkvals
))
kvals
<-
kvals
[
unique
(
names
(
kvals
))]
if
(
'an'
%in%
names
(
kvals
))
{
rkvals
<-
kvals
[
!
(
names
(
kvals
)
%in%
'an'
)]
rktab
<-
tabkey
(
rvs
$
m
$
out
$
tab
$
summ
,
kvals
=
rkvals
)
tabsel
<-
rvs
$
m
$
out
$
tab
$
summ
[
rktab
,
.
(
an
,
ms2_sel
)]
ansel
<-
tabsel
[
ms2_sel
==
T
,
an
]
print
(
'ansel'
)
print
(
ansel
)
if
(
length
(
ansel
)
!=
0
)
{
rktab
$
an
=
ansel
rvs
$
m
$
out
$
tab
$
summ
[
rktab
,
.
(
ms2_sel
:=
F
)]
}
}
## TODO: CHECK IF THIS WORKS!!!!! ESPECIALLY THE ABOVE AN TREATMENT.
tgts
<-
c
(
"ms1_rt"
,
"ms1_int"
,
names
(
n_qa
),
"ms2_sel"
)
srcs
<-
as.list
(
c
(
n_ms1_rt
,
n_ms1_int
,
n_qa
,
n_ms2_sel
))
rvs
$
m
$
out
$
tab
$
summ
[
tabkey
(
rvs
$
m
$
out
$
tab
$
summ
,
kvals
=
kvals
),
(
tgts
)
:=
..srcs
]
})
})
...
...
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