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Commit a36f514a authored by Todor Kondic's avatar Todor Kondic
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parent a905e0e9
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......@@ -107,7 +107,8 @@ gen_stgs_and_load <- function(fn_data,stgs,wd) {
stgs<-if (is.character(stgs)) yaml::yaml.load_file(stgs) else stgs
sfn<-file.path(wd,paste(basename(fn_data),".ini",sep=''))
mk_sett_file(stgs,sfn)
RMassBank::loadRmbSettings(sfn)
## RMassBank::loadRmbSettings(sfn)
sfn
}
##' Generates the RMassBank compound list and loads it.
......@@ -396,8 +397,8 @@ RMB_EIC_prescreen_intrn <- function (archive_name, RMB_mode, FileList, cmpd_list
##' @author Todor Kondić
##' @export
presc.single <- function(fn_data,stgs_alist,wd,mode,fn_cmpd_l,ppm_lim_fine=10,EIC_limit=0.001,nm_arch="archive") {
gen_stgs_and_load(fn_data,stgs_alist,wd)
sfn <- gen_stgs_and_load(fn_data,stgs_alist,wd)
RMassBank::loadRmbSettings(sfn)
## Generate and load the compound list.
x <- gen_cmpdl_and_load(fn_data,wd,fn_cmpd_l)
fn_comp <- x$fn_cmpdl
......
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