p.sw.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/mix.R
\name{p.sw}
\alias{p.sw}
\title{Parallel Spectral Workflow.}
\usage{
p.sw(cl, fn_data, stgs_alist, wd, fn_cmpd_list, mode, readMethod = "mzR",
  archdir = "archive", lastStep = 8, combine = F,
  combdest = "combined")
}
\arguments{
\item{cl}{Cluster.}

\item{fn_data}{A sequence of mzML input files.}

\item{stgs_alist}{A list of named list of settings, or a list of
filenames of YAML files containing the settings.}

\item{wd}{The list of working directories.}

\item{fn_cmpd_list}{The compound list characterising the mixtures.}

\item{mode}{Same as in msmsRead.}

\item{readMethod}{Same as in msmsRead.}

\item{archdir}{Name of the archive.}

\item{lastStep}{The last step in spectral workflow.}

\item{combine}{If TRUE, use combineMultiplicies to merge
workspaces corresponding to different collisional energies.}

\item{combdest}{Combine destination directory.}
}
\value{
A named list of spectral workspaces. The names are derived
from data filenames.
}
\description{
Interface to parallel spectral workflow.
}
\author{
Todor Kondić
}