autopep8 applied

biokb/biokb.py

@@ -10,6 +10,7 @@ from SPARQLWrapper.SPARQLExceptions import EndPointNotFound, EndPointInternalErr
 import logging
 logger = logging.getLogger(__name__)
 
+
 class BioKBClientException(Exception):
     pass
 
@@ -93,7 +94,7 @@ class BioKBservice(TextMiningService):
         values = []
         for result in results['results']['bindings']:
             entity_code = uri_to_code(result['other_entity']['value'])
-            count       = int(result['count']['value'])
-            co_occur    = CoOccurrence(entity_code, count)
+            count = int(result['count']['value'])
+            co_occur = CoOccurrence(entity_code, count)
             values.append(co_occur)
         return values

biokb/utils.py

 def uri_to_code(uri: str) -> str:
     """Translates URIs such as http://lcsb.uni.lu/biokb/entities/BTO_0001043 to BTO_0001043
-    
+
     Arguments:
         uri {str} -- [description]
-    
+
     Returns:
         str -- [description]
     """
-    return uri.split('/')[-1]
\ No newline at end of file
+    return uri.split('/')[-1]

interface/TextMiningService.py

@@ -3,6 +3,7 @@ from typing import List
 from models.publication import Publication
 from models.coocurrence import CoOccurrence
 
+
 class TextMiningService(metaclass=ABCMeta):
 
     def __init__(self, name: str, description: str):

models/coocurrence.py

 class CoOccurrence:
     def __init__(self, entity: str, score: float):
         self.entity = entity
-        self.score = score
\ No newline at end of file
+        self.score = score

models/publication.py

@@ -4,4 +4,4 @@ class Publication:
         self.pm_id = pm_id
         self.doi = doi
         self.preprint_id = preprint_id
-        self.other_id = other_id
\ No newline at end of file
+        self.other_id = other_id