From 1456aa816bea1e68e65055e361718a246d62477c Mon Sep 17 00:00:00 2001
From: Carlos Vega <carlos.vega@uni.lu>
Date: Tue, 19 Nov 2019 11:36:24 +0100
Subject: [PATCH] autopep8 applied
---
biokb/biokb.py | 5 +++--
biokb/utils.py | 6 +++---
interface/TextMiningService.py | 1 +
models/coocurrence.py | 2 +-
models/publication.py | 2 +-
5 files changed, 9 insertions(+), 7 deletions(-)
diff --git a/biokb/biokb.py b/biokb/biokb.py
index baa4600..e22c3d4 100644
--- a/biokb/biokb.py
+++ b/biokb/biokb.py
@@ -10,6 +10,7 @@ from SPARQLWrapper.SPARQLExceptions import EndPointNotFound, EndPointInternalErr
import logging
logger = logging.getLogger(__name__)
+
class BioKBClientException(Exception):
pass
@@ -93,7 +94,7 @@ class BioKBservice(TextMiningService):
values = []
for result in results['results']['bindings']:
entity_code = uri_to_code(result['other_entity']['value'])
- count = int(result['count']['value'])
- co_occur = CoOccurrence(entity_code, count)
+ count = int(result['count']['value'])
+ co_occur = CoOccurrence(entity_code, count)
values.append(co_occur)
return values
diff --git a/biokb/utils.py b/biokb/utils.py
index 41ec421..092c792 100644
--- a/biokb/utils.py
+++ b/biokb/utils.py
@@ -1,10 +1,10 @@
def uri_to_code(uri: str) -> str:
"""Translates URIs such as http://lcsb.uni.lu/biokb/entities/BTO_0001043 to BTO_0001043
-
+
Arguments:
uri {str} -- [description]
-
+
Returns:
str -- [description]
"""
- return uri.split('/')[-1]
\ No newline at end of file
+ return uri.split('/')[-1]
diff --git a/interface/TextMiningService.py b/interface/TextMiningService.py
index f2b07c6..b5237e2 100644
--- a/interface/TextMiningService.py
+++ b/interface/TextMiningService.py
@@ -3,6 +3,7 @@ from typing import List
from models.publication import Publication
from models.coocurrence import CoOccurrence
+
class TextMiningService(metaclass=ABCMeta):
def __init__(self, name: str, description: str):
diff --git a/models/coocurrence.py b/models/coocurrence.py
index 3dc0f8c..8d4384e 100644
--- a/models/coocurrence.py
+++ b/models/coocurrence.py
@@ -1,4 +1,4 @@
class CoOccurrence:
def __init__(self, entity: str, score: float):
self.entity = entity
- self.score = score
\ No newline at end of file
+ self.score = score
diff --git a/models/publication.py b/models/publication.py
index 84c2685..43d39bb 100644
--- a/models/publication.py
+++ b/models/publication.py
@@ -4,4 +4,4 @@ class Publication:
self.pm_id = pm_id
self.doi = doi
self.preprint_id = preprint_id
- self.other_id = other_id
\ No newline at end of file
+ self.other_id = other_id
--
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