Commits · dc51d7db6d0212b59f90d51c62045c469d4c6bdb · R3 / legacy / bedtools2

Mar 19, 2014
- Merge pull request #47 from nkindlon/master · dc51d7db
  Aaron Quinlan authored 11 years ago
  
  Fixed slop bug when slop factor exceeds MAX signed int.
  dc51d7db
Mar 18, 2014
- Fixed slop bug when slop factor exceeds MAX signed int. · 80820201
  nkindlon authored 11 years ago
  
  80820201
Mar 06, 2014
- Setting Release-Version v2.19.1 · a3fefa28
  arq5x authored 11 years ago
  
  v2.19.1
  
  a3fefa28
- Setting Release-Version v2.19.1 · 732f6830
  arq5x authored 11 years ago
  
  732f6830
- Setting Release-Version v2.19.1 · 37190385
  arq5x authored 11 years ago
  
  37190385
- [DOC] multiple ops/cols allowed in a single map run. also, speed comparo. · 50324380
  arq5x authored 11 years ago
  
  50324380
- Merge pull request #43 from nkindlon/master · 733c84b9
  Aaron Quinlan authored 11 years ago
  
  Fixed intersect bug so that bed query with Bam DB correctly gives bed ou...
  733c84b9
Mar 04, 2014
- Fixed intersect bug so that bed query with Bam DB correctly gives bed output. Added unit test. · 95098092
  nkindlon authored 11 years ago
  
  95098092
Mar 01, 2014
- Merge pull request #40 from theoryno3/master · 8be65396
  Aaron Quinlan authored 11 years ago
  
  added: mm10 mouse genome
  8be65396
- Merge pull request #41 from nkindlon/master · 1a0737df
  Aaron Quinlan authored 11 years ago
  
  Refactored KeyListOps, Context, mapFile to make KeyListOps reusable by other tools
  1a0737df
Feb 28, 2014
- More unit tests, also fixed files messed up by previous merge attempt. · af1113e7
  nkindlon authored 11 years ago
  
  af1113e7
- forgot main Makefile update. · 8bba8822
  nkindlon authored 11 years ago
  
  8bba8822
- Refactored KeyListOps, Context, mapFile for KeyListOps re-usability by other tools. · 2268ee4f
  nkindlon authored 11 years ago
  
  2268ee4f
Feb 23, 2014
- added: mm10 mouse genome · a70cc305
  Paul Rigor authored 11 years ago
  
  a70cc305
Feb 20, 2014
- Merge pull request #39 from nkindlon/master · 4793c986
  Aaron Quinlan authored 11 years ago
  
  Created new KeyListOps class to replace vectorOps. Converted map tool to...
  4793c986
Feb 19, 2014
- Created new KeyListOps class to replace vectorOps. Converted map tool to this. · 77c1bdad
  nkindlon authored 11 years ago
  
  77c1bdad
Feb 10, 2014
- Update README.md · c8bfb023
  Aaron Quinlan authored 11 years ago
  
  c8bfb023
Feb 09, 2014
- Merge pull request #37 from jayhesselberth/patch-1 · 20395947
  Aaron Quinlan authored 11 years ago
  
  Update related-tools.rst with intersphinx
  20395947
- Update related-tools.rst · 1ba07ada
  Jay Hesselberth authored 11 years ago
  
  Added to "related tools", seemed the most appropriate place for now.
  1ba07ada
- Merge pull request #36 from arjanvandervelde/patch-1 · 94d4ccad
  Aaron Quinlan authored 11 years ago
  
  Update installation.rst
  94d4ccad
- Update installation.rst · d5cebc6d
  arjanvandervelde authored 11 years ago
  
  added macports as an option for installing bedtools on mac os x.
  d5cebc6d
- Setting Release-Version v2.19.0 · d677066e
  arq5x authored 11 years ago
  
  v2.19.0
  
  d677066e
- Setting Release-Version v2.19.0 · be3415c7
  arq5x authored 11 years ago
  
  be3415c7
- Setting Release-Version v2.19.0 · ec052061
  arq5x authored 11 years ago
  
  ec052061
- add intersphinx support thanks to @jayhesselberth · 9235f898
  arq5x authored 11 years ago
  
  9235f898
- update sidebar · ec72cd31
  arq5x authored 11 years ago
  
  ec72cd31
- update map docs · ee0c7d82
  arq5x authored 11 years ago
  
  ee0c7d82
- Merge pull request #35 from jayhesselberth/intersphinx · eb9c9368
  Aaron Quinlan authored 11 years ago
  
  Intersphinx
  eb9c9368
Feb 08, 2014
- * fix spelling · c038f04e
  jayhesselberth authored 11 years ago
  
  c038f04e
- * modified rst to add labels for inclusion in objects.inv & intersphinx · 2428d35a
  jayhesselberth authored 11 years ago
  
  * capability
  2428d35a
Feb 06, 2014
- Merge pull request #33 from nkindlon/master · b5e50708
  Aaron Quinlan authored 11 years ago
  
  Refactored contexts for validation, added unit tests, enabled -plit for ...
  b5e50708
- Merge pull request #32 from timflutre/master · 25d24e78
  Aaron Quinlan authored 11 years ago
  
  typo on option -useFullHeader
  25d24e78
- Added -split option to map help. · 85df2b4a
  nkindlon authored 11 years ago
  
  85df2b4a
- Added unit test to intersect for gff files. · bf296c8c
  nkindlon authored 11 years ago
  
  bf296c8c
- Removed unnecessary NULL checks on delete. · d0fb3059
  nkindlon authored 11 years ago
  
  d0fb3059
- Removed outdated comment · 14caf06b
  nkindlon authored 11 years ago
  
  14caf06b
- Fixed a cut/paste error in unit test comment. · d92fdfdb
  nkindlon authored 11 years ago
  
  d92fdfdb
- Refactored contexts for validation, added unit tests, enabled -plit for map. · b912d88c
  nkindlon authored 11 years ago
  
  b912d88c
Feb 03, 2014
- add -valueOnly option to jaccard · 952088e8
  arq5x authored 11 years ago
  
  952088e8
- typo on option -useFullHeader · 369bc723
  Timothée Flutre authored 11 years ago
  
  369bc723