First public source release. Version 1.1
1. Added a README for installation 2. Modified intersectBed and windowBed to call one function for finding overlaps. This function is now called when reading from cin or from a file. 3. Added acknowledgements. 4. Corrected the PROGRAM_NAME in coverageBed
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- Makefile 0 additions, 3 deletionsMakefile
- README 42 additions, 0 deletionsREADME
- src/complementBed/Makefile 1 addition, 1 deletionsrc/complementBed/Makefile
- src/complementBed/complementBed.cpp 10 additions, 0 deletionssrc/complementBed/complementBed.cpp
- src/coverageBed/Makefile 1 addition, 1 deletionsrc/coverageBed/Makefile
- src/coverageBed/coverageBed.cpp 9 additions, 0 deletionssrc/coverageBed/coverageBed.cpp
- src/coverageBed/coverageMain.cpp 1 addition, 1 deletionsrc/coverageBed/coverageMain.cpp
- src/fastaFromBed/Makefile 1 addition, 1 deletionsrc/fastaFromBed/Makefile
- src/fastaFromBed/fastaFromBed.cpp 10 additions, 0 deletionssrc/fastaFromBed/fastaFromBed.cpp
- src/genomeCoverageBed/Makefile 1 addition, 1 deletionsrc/genomeCoverageBed/Makefile
- src/genomeCoverageBed/genomeCoverageBed.cpp 9 additions, 0 deletionssrc/genomeCoverageBed/genomeCoverageBed.cpp
- src/intersectBed/Makefile 1 addition, 1 deletionsrc/intersectBed/Makefile
- src/intersectBed/intersectBed.cpp 64 additions, 95 deletionssrc/intersectBed/intersectBed.cpp
- src/intersectBed/intersectBed.h 2 additions, 1 deletionsrc/intersectBed/intersectBed.h
- src/mergeBed/Makefile 1 addition, 1 deletionsrc/mergeBed/Makefile
- src/mergeBed/mergeBed.cpp 11 additions, 0 deletionssrc/mergeBed/mergeBed.cpp
- src/sortBed/Makefile 1 addition, 1 deletionsrc/sortBed/Makefile
- src/sortBed/sortBed.cpp 10 additions, 0 deletionssrc/sortBed/sortBed.cpp
- src/utils/bedFile/Makefile 1 addition, 1 deletionsrc/utils/bedFile/Makefile
- src/utils/bedFile/bedFile.cpp 15 additions, 0 deletionssrc/utils/bedFile/bedFile.cpp
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