1. 24 Apr, 2009 1 commit
    • Aaron Quinlan's avatar
      First public source release. Version 1.1 · ff4edaf0
      Aaron Quinlan authored
      	1.  Added a README for installation
      	2.  Modified intersectBed and windowBed to call one function for
      	    finding overlaps.  This function is now called when reading
      	    from cin or from a file.
      	3.  Added acknowledgements.
      	4.  Corrected the PROGRAM_NAME in coverageBed
      ff4edaf0
  2. 23 Apr, 2009 6 commits
  3. 21 Apr, 2009 3 commits
    • Aaron Quinlan's avatar
      Changed usage statements to include infor on stdin · 2a308f7b
      Aaron Quinlan authored
      	1. Changed intersectMain.cpp, complementMain.cpp and mergeMain.cpp to
      	   include information on how to run using stdin.
      2a308f7b
    • Aaron Quinlan's avatar
      Updated bedFile.cpp for better stdin support · b89e8b56
      Aaron Quinlan authored
      	1.  Changed BedFile::loadBedFileIntoMapNoBin() to allow either "" or "stdin".
      	2.  Consequently, this allows mergeBed to accept stdin as well.
      b89e8b56
    • Aaron Quinlan's avatar
      Updated mergeBed reporting logic · 80f29d23
      Aaron Quinlan authored
      	1.  Changed the cout statements for the last entries for a chromosome.
      	2.  I had forgotten to report the number of merged entries when -n is requested.
      	3.  I also fixed a bug that occassionally caused the last entry for a chromosome
      	    to report the chrom twice in the output.
      80f29d23
  4. 15 Apr, 2009 2 commits
  5. 10 Apr, 2009 3 commits
  6. 09 Apr, 2009 3 commits