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Commit 3f03f6d0 authored by arq5x's avatar arq5x
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[DOC] fix formatting for unionbedg

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docs/content/tools/unionbedg.rst
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...@@ -33,9 +33,9 @@ Usage: ...@@ -33,9 +33,9 @@ Usage:
========================================================================== ==========================================================================
Default behavior Default behavior
========================================================================== ==========================================================================
Figure:
:: ::
cat 1.bg cat 1.bg
chr1 1000 1500 10 chr1 1000 1500 10
chr1 2000 2100 20 chr1 2000 2100 20
...@@ -65,9 +65,9 @@ Figure: ...@@ -65,9 +65,9 @@ Figure:
========================================================================== ==========================================================================
``-header`` Add a header line to the output ``-header`` Add a header line to the output
========================================================================== ==========================================================================
Figure:
:: ::
unionBedGraphs -i 1.bg 2.bg 3.bg -header unionBedGraphs -i 1.bg 2.bg 3.bg -header
chrom start end 1 2 3 chrom start end 1 2 3
chr1 900 1000 0 60 0 chr1 900 1000 0 60 0
...@@ -84,9 +84,9 @@ Figure: ...@@ -84,9 +84,9 @@ Figure:
========================================================================== ==========================================================================
``-names`` Add a header line with custom file names to the output ``-names`` Add a header line with custom file names to the output
========================================================================== ==========================================================================
Figure:
:: ::
unionBedGraphs -i 1.bg 2.bg 3.bg -header -names WT-1 WT-2 KO-1 unionBedGraphs -i 1.bg 2.bg 3.bg -header -names WT-1 WT-2 KO-1
chrom start end WT-1 WT-2 KO-1 chrom start end WT-1 WT-2 KO-1
chr1 900 1000 0 60 0 chr1 900 1000 0 60 0
...@@ -105,9 +105,9 @@ Figure: ...@@ -105,9 +105,9 @@ Figure:
========================================================================== ==========================================================================
``-empty`` Include regions that have zero coverage in all BEDGRAPH files. ``-empty`` Include regions that have zero coverage in all BEDGRAPH files.
========================================================================== ==========================================================================
Figure:
:: ::
unionBedGraphs -i 1.bg 2.bg 3.bg -empty -g sizes.txt -header unionBedGraphs -i 1.bg 2.bg 3.bg -empty -g sizes.txt -header
chrom start end WT-1 WT-2 KO-1 chrom start end WT-1 WT-2 KO-1
chrom start end 1 2 3 chrom start end 1 2 3
...@@ -128,9 +128,9 @@ Figure: ...@@ -128,9 +128,9 @@ Figure:
========================================================================== ==========================================================================
``-filler`` Use a custom value for missing values. ``-filler`` Use a custom value for missing values.
========================================================================== ==========================================================================
Figure:
:: ::
unionBedGraphs -i 1.bg 2.bg 3.bg -empty -g sizes.txt -header -filler N/A unionBedGraphs -i 1.bg 2.bg 3.bg -empty -g sizes.txt -header -filler N/A
chrom start end WT-1 WT-2 KO-1 chrom start end WT-1 WT-2 KO-1
chrom start end 1 2 3 chrom start end 1 2 3
...@@ -151,9 +151,9 @@ Figure: ...@@ -151,9 +151,9 @@ Figure:
========================================================================== ==========================================================================
Use BEDGRAPH files with non-numeric values. Use BEDGRAPH files with non-numeric values.
========================================================================== ==========================================================================
Figure:
:: ::
cat 1.snp.bg cat 1.snp.bg
chr1 0 1 A/G chr1 0 1 A/G
chr1 5 6 C/T chr1 5 6 C/T
......
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