diff --git a/docs/content/tools/unionbedg.rst b/docs/content/tools/unionbedg.rst index 41ce91f2063b0f444e0f1b58c27caf00c16e66a5..0874a6da6618dbbf5a57f71a4a5116e875afa162 100755 --- a/docs/content/tools/unionbedg.rst +++ b/docs/content/tools/unionbedg.rst @@ -33,9 +33,9 @@ Usage: ========================================================================== Default behavior ========================================================================== -Figure: :: + cat 1.bg chr1 1000 1500 10 chr1 2000 2100 20 @@ -65,9 +65,9 @@ Figure: ========================================================================== ``-header`` Add a header line to the output ========================================================================== -Figure: :: + unionBedGraphs -i 1.bg 2.bg 3.bg -header chrom start end 1 2 3 chr1 900 1000 0 60 0 @@ -84,9 +84,9 @@ Figure: ========================================================================== ``-names`` Add a header line with custom file names to the output ========================================================================== -Figure: :: + unionBedGraphs -i 1.bg 2.bg 3.bg -header -names WT-1 WT-2 KO-1 chrom start end WT-1 WT-2 KO-1 chr1 900 1000 0 60 0 @@ -105,9 +105,9 @@ Figure: ========================================================================== ``-empty`` Include regions that have zero coverage in all BEDGRAPH files. ========================================================================== -Figure: :: + unionBedGraphs -i 1.bg 2.bg 3.bg -empty -g sizes.txt -header chrom start end WT-1 WT-2 KO-1 chrom start end 1 2 3 @@ -128,9 +128,9 @@ Figure: ========================================================================== ``-filler`` Use a custom value for missing values. ========================================================================== -Figure: :: + unionBedGraphs -i 1.bg 2.bg 3.bg -empty -g sizes.txt -header -filler N/A chrom start end WT-1 WT-2 KO-1 chrom start end 1 2 3 @@ -151,9 +151,9 @@ Figure: ========================================================================== Use BEDGRAPH files with non-numeric values. ========================================================================== -Figure: :: + cat 1.snp.bg chr1 0 1 A/G chr1 5 6 C/T