Conda envs: smaller YAML files
I would like to propose to have smaller
conda env. YAML files instead of the big monolithic per-step files being currently used.
snakemake's documentation the
conda environments should be
as finegrained as possible to improve transparency and maintainability.
In many cases, it makes sense to have per-rule or per-tool YAML files, e.g. for
This could be discussed and decided for each step and rule to avoid installation of the same tools in different environments.