IMPiris_VG: MultiQC single-sample summary report
Create a MultiQC
summary report for a single-sample analysis
Modules to include (will be updated in the process)
-
Cutadapt- special case, NextSeq
- currently not used
-
FastQC -
SortMeRNA -
Trimmomatic -
Bowtie 2- currently not used
-
Bcftools- only for command
stats
- currently not used
- only for command
-
featureCounts -
Prokka -
QUAST- currently not used
-
Samtools- for commands
stats
,flagstats
,idxstats
,rmdup
- currently not used
- for commands
-
VCFtools- currently not used
-
Bamtool- currently not used