how to use the pipeline in interactive mode?
Hi,
This is not exactly a bug report but a support request so excuse me if this is not the right place for it.
I am trying to run the pipeline in interactive mode using the impy --enter
option as explained in the docs but when entering the container I don't know how to execute the pipeline. I cannot find anything in ~/bin/
and then trying to execute the file ~code/impy.py
it doesn't work neither.
imp@390b7d55dbba:~$ python ~/code/impy.py
Traceback (most recent call last):
File "/home/imp/code/impy.py", line 1, in <module>
import click
ImportError: No module named click
Am I doing something wrong? what would be the right way to execute the container in interactive mode?
thanks for any help.
p.s. I am trying this approach because in our cluster it's not possible to use docker so I want to try to import the docker image inside a singularity container to be executed in the cluster but by now I am only using docker to test. If I manage to execute the pipeline in interactive mode in docker then I will try to do the same with singularity