IncompleteFilesException error
Following error:
$ impy init --index ~/hg38.fa
[x] Found IMP docker-r3lab.uni.lu/imp/imp 1.4.1
IMP image found
Executing IMP command:
docker run --rm --name home_federico_impyinstall_imp_db -v /home/federico/impyinstall/imp-db:/home/imp/databases -e "LOCAL_USER_ID=`id -u $USER`" -e "LOCAL_GROUP_ID=`id -g $USER`" -e FILTER="hg38" docker-r3lab.uni.lu/imp/imp:1.4.1 snakemake -s /home/imp/code/rules/ini/init
IncompleteFilesException:
The files below seem to be incomplete. If you are sure that certain files are not incomplete, mark them as complete with
snakemake --cleanup-metadata <filenames>
To re-generate the files rerun your command with the --rerun-incomplete flag.
Incomplete files:
filtering/hg38.fa
I downloaded the file hg38.fa
using:
$ wget http://hgdownload.cse.ucsc.edu/goldenPath/hg38/bigZips/hg38.fa.gz
and then unzipped it using:
$ gunzip hg38.fa.gz
Running the following command:
$ snakemake --cleanup-metadata ./imp-db/filtering/hg38.fa
yields:
Error: Snakefile "Snakefile" not present.
Can you help me out please? Thanks.