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  • IMP
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  • #165

Closed
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Created Apr 25, 2022 by EE@esraagithub

input data error

hello

i use docker for running IMP as non-root, after following instruction of installation i tried to run IMP using this code: impy --threads 8 --memtotal 32 --memcore 4 run -m /root/esraa/dna_data/dna_sample1_R1.fq -m /root/esraa/dna_data/dna_sample1_R2.fq -o output --single-omics

i got this error:

**MissingInputException in line 90 of /home/imp/code/rules/data.input.rules: Missing input files for rule prepare_input_data: /home/imp/data/dna_sample1_R1.fq /home/imp/data/dna_sample1_R2.fq **

in this error, it says my data is located in /home/imp/data/ directory but really i don't have this directory

Also running impy --enter ... showed that i don't have the data/ directory

~/code$ ls CHANGELOG MANIFEST.in README.rst VERSION docker impy.py outpu requirements.txt setup.py test LICENSE PyPI.md Snakefile conf imp-db lib output rules src workflows

how can i fix this problem?

thank you

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