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Commit c4312668 authored by Anna Buschart's avatar Anna Buschart
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mOTU readme

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......@@ -4,9 +4,9 @@ In order to assign the taxonomy to the study sample reads, we use [Bowtie2](http
First, the contigs from the contaminant control samples are indexed in Bowtie2:
´´´
```
bowtie2-build Pooled_Contamination.mg.vizbin.filtered.fa Pooled_contaminationContigs
´´´
```
Then the reads from each sample are mapped against these contigs:
```
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