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tm_curation/curate_from_tm.md

@@ -48,7 +48,7 @@ The file contains a table with the following columns:
 
 1.1.2 Choose "Import sentences"
 
-![login](../images/1_1_login_menu.png)
+<img src="../images/1_1_login_menu.png"  width="600">
 
 ### 1.2. Import sentences from a file
     
@@ -56,7 +56,7 @@ The file contains a table with the following columns:
 
 1.2.2 Explore sentences from the file are imported and shown in the area below (2 in the figure below)
 
-![import](../images/1_2_import.png)
+<img src="../images/1_2_import.png"  width="600">
 
 ### 1.3. Filter by keywords
 	
@@ -67,7 +67,7 @@ Important to note:
 
 1.3.2 Notice that the number of results is dynamically reduced (2 in the figure below)
 
-![filter](../images/1_3_filter_imported_sentences.png)
+<img src="../images/1_3_filter_imported_sentences.png"  width="600">
 
 ### 1.4. Add entries to the "Curator's basket"
     
@@ -77,7 +77,7 @@ Important to note:
 
 1.4.3 Click "Go to basket" to start curation using the selected entries (3 in the figure below)
 	
-![go to basket](../images/1_4_select_basket.png)
+<img src="../images/1_4_select_basket.png"  width="600">
 
 ## Step 2: Build facts from entries in the Basket
 
@@ -91,13 +91,13 @@ Take a look at the [vocabulary disclaimer](#read-first-vocabulary-and-data-model
 
 2.1.3 Set up the initial compartment for the facts, use ![menuadd](../images/0_add.png) button to add a compartment and ![menuedit](../images/0_edit.png) to edit it. In the example below, the compartment is set to "cell" with the [qualifier annotation](http://mbine.org/standards/qualifiers) set to "bqbiol:is", annotation ontology set to "Cell Ontology" and the assigned identifier to [CL:0000000 (cell)](http://purl.obolibrary.org/obo/CL_0000000) (3 in the figure below).
 
-![set up basket](../images/2_1_basket_details_inset.png)
+<img src="../images/2_1_basket_details_inset.png"  width="600">
 
 ### 2.2. Add elements
 
 2.2.1 Drag and drop elements of an interaction. Example: drag "TNF" and "p65".
 
-![drag drop](../images/2_2_move.png)
+<img src="../images/2_2_move.png"  width="600">
 
 2.2.2 Cell type and element type need to be defined for the imported elements.  
 
@@ -108,7 +108,7 @@ Example:
 
 Repeat for p65 and set its name to "RELA" by modifying the field "Species Name".
 
-![tnf complete](../images/2_3_complete.png)
+<img src="../images/2_3_complete.png"  width="400">
 
 2.2.3 With defined elements, create an interaction: use ![menuadd](../images/0_add.png) button to add a compartment and ![menuedit](../images/0_edit.png) to edit it. Complete the information to create a simple interaction representing positive influence of TNF on RELA (p65).  
 
@@ -116,7 +116,7 @@ Repeat for p65 and set its name to "RELA" by modifying the field "Species Name".
 - set "Reaction type" to "Positive influence"
 - set "Reactant" to "TNF" and "Product" to "RELA".  
 
-![simple reaction](../images/2_4_reaction.png)
+<img src="../images/2_4_reaction.png"  width="400">
 
 2.2.4 With defined interaction, create a fact and annotate it with the sentence. Use ![menuadd](../images/0_add.png) button to add a fact. Then:
 
@@ -124,8 +124,8 @@ Repeat for p65 and set its name to "RELA" by modifying the field "Species Name".
 
 2. Drag the corresponding field to the evidence area of the fact.
 
-<img src="../images/2_5_fact_p1.png" width="300">
+<img src="../images/2_5_fact_p1.png" width="600">
 
 2.2.4 Persist a fact using the ![menusave](../images/0_save.png) button. Persisted facts will have an identifier assigned and will become publicly visible. See the fact from this example [here](https://biokb.lcsb.uni.lu/fact/642).
 
-<img src="../images/2_5_fact_p2.png"  width="300">
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+<img src="../images/2_5_fact_p2.png"  width="600">
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