The Shinyscreen Package
Usage
Prescreening
- Generate prescreening data frames,
presc.do(list.files(path="~/ECI_SCRATCH/20190627_HEROBER",patt=".*.mzML",full.names=T), mode="pH",fn_cmpd_l="./cutlist.csv",proc=F,dest=".")
This is to be carried out inside the directory containing the
mzML
files. For sequential execution, leave out theproc
argument. - Plot,
require(rmbmix) presc.plot(list.files(".",patt="2.*POS",include.dirs=T),mode="pH",cex=0.7,rt_digits=2,m_digits=4,pal="Dark2",out="prescreen.pdf")
The only argument is a sequence of absolute paths to directories containing the prescreen data. The resulting plot file is going to be placed into the current working directory.