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Commit 2d4dbfa7 authored by Todor Kondic's avatar Todor Kondic
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Update README.org

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...@@ -5,7 +5,8 @@ ...@@ -5,7 +5,8 @@
** Prescreening ** Prescreening
1. Generate prescreening data frames, 1. Generate prescreening data frames,
#+BEGIN_SRC R #+BEGIN_SRC R
presc.do(list.files(patt=".*mzML"),"pH",fn_cmpd_list="./Pesticides.info.csv",proc=4) presc.do(list.files(path="~/ECI_SCRATCH/20190627_HEROBER",patt=".*.mzML",full.names=T),
mode="pH",fn_cmpd_l="./cutlist.csv",proc=F,dest=".")
#+END_SRC #+END_SRC
This is to be carried out inside the directory containing the This is to be carried out inside the directory containing the
~mzML~ files. For sequential execution, leave out the ~proc~ ~mzML~ files. For sequential execution, leave out the ~proc~
...@@ -13,7 +14,7 @@ ...@@ -13,7 +14,7 @@
2. Plot, 2. Plot,
#+BEGIN_SRC R #+BEGIN_SRC R
require(rmbmix) require(rmbmix)
presc.plot(normalizePath(list.dirs(".",recursive=F,full.names=F))) presc.plot(list.files(".",patt="2.*POS",include.dirs=T),cex=0.7,digits=4)
#+END_SRC #+END_SRC
The only argument is a sequence of absolute paths to directories The only argument is a sequence of absolute paths to directories
containing the prescreen data. The resulting plot file is going containing the prescreen data. The resulting plot file is going
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