tests of variants and highlights

src/js/ols.js

@@ -88,6 +88,5 @@ const ancestorsContainDisease = function(ancestorsJson) {
 
 module.exports = {
     suggestDiseases: suggestDiseases
-    ,suggestDiseasesSimple: suggestDiseasesSimple
     , getDisease: getDisease
 };
\ No newline at end of file

tests/test.js

@@ -74,7 +74,7 @@ async function getPluginHash(){
 describe("disease-association plugin", async function() {
 
     //Some functions can take a lot of time as they need, for isntance, start MINERVA interface
-    this.timeout(30000);
+    this.timeout(60000);
 
     let driver;
     let minervaProxy;
@@ -90,7 +90,7 @@ describe("disease-association plugin", async function() {
         return driver.executeScript(`minervaProxy = ${minervaProxyCode}; minervaProxy.project.map.getHighlightedBioEntities().then( highlighted => minervaProxy.project.map.hideBioEntity(highlighted) )`);
     }
 
-    async function countHighlighted(){
+    async function getHighlighted(){
         return driver.executeAsyncScript(`
                     var callback = arguments[arguments.length - 1];
                     ${minervaProxyCode}.project.map.getHighlightedBioEntities().then(highlighted => callback(highlighted));                    
@@ -126,7 +126,7 @@ describe("disease-association plugin", async function() {
                     return $('.disease-input-group .tt-menu.tt-open').css("display")
                 });
                 return display === "block";
-            }, 25000);
+            }, 30000);
             await wait(1000);
         });
 
@@ -165,12 +165,34 @@ describe("disease-association plugin", async function() {
                     assert.isAbove(genes.length, 1);
                 });
 
-                describe("clicking on SNCA", function () {
-                    before(async function () {
+                it("should show variants", async function () {
+                    driver.executeScript(function () {
+                        $($('table.variation-table a.detail-icon i.fa-plus')[0]).parent().click();
+                    });
+                    await driver.wait(until.elementLocated(By.css('#tree-LRRK2-Homo_sapiens li')), 2000);
+                    const variants = await driver.findElements(By.css('table.variation-table tr.detail-view li'));
+                    assert.isAbove(variants.length, 1);
+
+                    const plus = await variants[0].findElements(By.css('.fa-plus'));
+                    plus[0].click();
+                    await driver.wait(until.elementLocated(By.css('#tree-LRRK2-Homo_sapiens span.indent')), 2000);
+                    const detail = await driver.executeScript(function () {
+                        return $('#tree-LRRK2-Homo_sapiens span.indent').parent().find('a')[0];
+                    });
+                    assert.include(await detail.getText(), 'A0A1B0GUQ3');
+                });
 
+                describe("clicking on LRRK", function () {
+                    before(async function () {
+                        const markers  = await driver.findElements(By.css('table.variation-table .fa-map-marker-alt'));
+                        markers[0].click();
+                        await wait(500);
                     });
 
-                    it("should highlight in map");
+                    it("should highlight in map", async function () {
+                        highlighted = await getHighlighted();
+                        assert.equal(highlighted.length, 2);
+                    });
 
                 })
             });