dirty way of mapping locus:id to uniprot

Closes #1898 (closed)

annotation/src/main/java/lcsb/mapviewer/annotation/cache/BigFileCacheImpl.java

@@ -55,7 +55,7 @@ public class BigFileCacheImpl implements BigFileCache {
   /**
    * Buffer size used for downloading single chunk of a file.
    */
-  private static final int DOWNLOAD_BUFFER_SIZE = 1024;
+  private static final int DOWNLOAD_BUFFER_SIZE = 1024 * 1024;
 
   /**
    * Default class logger.
@@ -209,6 +209,7 @@ public class BigFileCacheImpl implements BigFileCache {
     if (url.toLowerCase().startsWith("ftp:")) {
       computations = new GetFtpFileTask(url, updater);
     } else if (url.toLowerCase().startsWith("http:") || url.toLowerCase().startsWith("https:")) {
+
       computations = new GetHttpFileTask(url, updater);
     } else {
       throw new URISyntaxException(url, "Unknown protocol for url");
@@ -219,6 +220,7 @@ public class BigFileCacheImpl implements BigFileCache {
     } else {
       Future<Void> task = syncExecutorService.submit(computations);
       executeTask(task);
+
     }
   }
 
@@ -258,19 +260,18 @@ public class BigFileCacheImpl implements BigFileCache {
   }
 
   /**
-   * Checks if local file for given url is up to date. The check is based on
-   * file size check (ftp doesn't provide checksums for files, so we cannot
-   * compare it differently without downloading file).
+   * Checks if local file for given url is up to date. The check is based on file
+   * size check (ftp doesn't provide checksums for files, so we cannot compare it
+   * differently without downloading file).
    *
    * @param url
    *          url to ftp file
-   * @return <code>true</code> if file is up to date, <code>false</code> in
-   *         other case
+   * @return <code>true</code> if file is up to date, <code>false</code> in other
+   *         case
    * @throws URISyntaxException
    *           thrown when url is invalid
    * @throws IOException
-   *           thrown when there is a problem with accessing local or remote
-   *           file
+   *           thrown when there is a problem with accessing local or remote file
    */
   @Override
   public boolean isLocalFileUpToDate(final String url) throws URISyntaxException, IOException {
@@ -288,8 +289,7 @@ public class BigFileCacheImpl implements BigFileCache {
    *
    * @param url
    *          url to remote file
-   * @return <code>true</code> if file is up to date, <code>false</code>
-   *         otherwise
+   * @return <code>true</code> if file is up to date, <code>false</code> otherwise
    * @throws FileNotFoundException
    *           thrown when local file cannot be found
    * @throws URISyntaxException
@@ -347,8 +347,7 @@ public class BigFileCacheImpl implements BigFileCache {
    *
    * @param url
    *          url to remote file
-   * @return <code>true</code> if file is up to date, <code>false</code>
-   *         otherwise
+   * @return <code>true</code> if file is up to date, <code>false</code> otherwise
    * @throws IOException
    *           thrown when local file cannot be found or there is a problem with
    *           accessing remote file
@@ -530,8 +529,7 @@ public class BigFileCacheImpl implements BigFileCache {
    *
    * @param sourceUrl
    *          url that identifies file
-   * @return <code>true</code> if the file is cached, <code>false</code>
-   *         otherwise
+   * @return <code>true</code> if the file is cached, <code>false</code> otherwise
    */
   @Override
   public boolean isCached(final String sourceUrl) {
@@ -776,9 +774,7 @@ public class BigFileCacheImpl implements BigFileCache {
         entry.setDownloadProgress(IProgressUpdater.MAX_PROGRESS);
         self.update(entry);
         updater.setProgress(IProgressUpdater.MAX_PROGRESS);
-
         output.close();
-
         return null;
       } catch (final Exception e) {
         logger.error(e, e);