issues that were discovered during biohackathon 2019 in Paris

model/src/main/java/lcsb/mapviewer/model/map/MiriamType.java

@@ -110,6 +110,14 @@ public enum MiriamType {
       "",
       "CHEBI:36927"),
 
+  CHEM_ID_PLUS("ChemIDplus",
+      "https://chem.nlm.nih.gov/chemidplus/",
+      new String[] { "urn:miriam:chemidplus" },
+      new Class<?>[] { Chemical.class, Drug.class, }, "MIR:00000096",
+      new Class<?>[] { Chemical.class },
+      "chemidplus",
+      "57-27-2"),
+
   /**
    * ChemSpider database:
    * <a href = "http://www.chemspider.com/">http://www.chemspider.com/</a>.
@@ -208,6 +216,14 @@ public enum MiriamType {
       "ec-code",
       "1.1.1.1"),
 
+  ECOGENE("EcoGene",
+      "http://ecogene.org/",
+      new String[] { "urn:miriam:ecogene" },
+      new Class<?>[] {}, "MIR:00000163",
+      new Class<?>[] {},
+      "ecogene",
+      "EG10173"),
+
   /**
    * Ensembl: www.ensembl.org.
    */
@@ -241,6 +257,22 @@ public enum MiriamType {
       "ncbigene",
       "100010"),
 
+  FLYBASE("FlyBase",
+      "https://www.alliancegenome.org",
+      new String[] { "urn:miriam:fb" },
+      new Class<?>[] {}, "MIR:00000030",
+      new Class<?>[] {},
+      "fb",
+      "FBgn0011293"),
+
+  GENE_DB("GeneDB",
+      "https://www.genedb.org/",
+      new String[] { "urn:miriam:genedb" },
+      new Class<?>[] {}, "MIR:00000106",
+      new Class<?>[] {},
+      "genedb",
+      "LinJ.20.0070"),
+
   /**
    * Gene Ontology: http://amigo.geneontology.org/amigo.
    */
@@ -286,6 +318,14 @@ public enum MiriamType {
       "hmdb",
       "HMDB00001"),
 
+  INTACT("IntAct",
+      "https://www.ebi.ac.uk/intact/",
+      new String[] { "urn:miriam:intact" },
+      new Class<?>[] {}, "MIR:00000010",
+      new Class<?>[] {},
+      "intact",
+      "EBI-2307691"),
+
   /**
    * InterPro: http://www.ebi.ac.uk/interpro/.
    */
@@ -308,6 +348,14 @@ public enum MiriamType {
       "kegg.compound",
       "C12345"),
 
+  KEGG_DRUG("KEGG Drug",
+      "https://www.genome.jp/kegg/drug/",
+      new String[] { "urn:miriam:kegg.drug" },
+      new Class<?>[] {}, "MIR:00000025",
+      new Class<?>[] {},
+      "kegg.drug",
+      "D00123"),
+
   /**
    * KEGG Genes: http://www.genome.jp/kegg/genes.html.
    */
@@ -352,6 +400,22 @@ public enum MiriamType {
       "kegg.reaction",
       "R00100"),
 
+  KNAPSACK("KnapSack",
+      "http://kanaya.aist-nara.ac.jp/KNApSAcK/",
+      new String[] { "urn:miriam:knapsack" },
+      new Class<?>[] {}, "MIR:00000271",
+      new Class<?>[] {},
+      "knapsack",
+      "C00000001"),
+
+  LIPID_MAPS("LIPID MAPS",
+      "http://www.lipidmaps.org",
+      new String[] { "urn:miriam:lipidmaps" },
+      new Class<?>[] {}, "MIR:00000052",
+      new Class<?>[] {},
+      "lipidmaps",
+      "LMPR0102010012"),
+
   /**
    * MeSH 2012: http://www.nlm.nih.gov/mesh/.
    */
@@ -407,6 +471,14 @@ public enum MiriamType {
       "",
       "MGI:2442292"),
 
+  NCBI_PROTEIN("NCBI Protein",
+      "https://www.ncbi.nlm.nih.gov/protein",
+      new String[] { "urn:miriam:ncbiprotein" },
+      new Class<?>[] {}, "MIR:00000344",
+      new Class<?>[] {},
+      "ncbiprotein",
+      "CAA71118.1"),
+
   OBI("Ontology for Biomedical Investigations",
       "https://www.ebi.ac.uk/ols/ontologies/obi/",
       new String[] { "urn:miriam:obi", "http://identifiers.org/obi/" },
@@ -437,6 +509,14 @@ public enum MiriamType {
       "panther.family",
       "PTHR12345"),
 
+  PATO("PATO",
+      "https://www.ebi.ac.uk/ols/ontologies/pato",
+      new String[] { "urn:miriam:pato" },
+      new Class<?>[] {}, "MIR:00000112",
+      new Class<?>[] {},
+      "",
+      "PATO:0001998"),
+
   /**
    * PDB: http://www.pdbe.org/.
    */
@@ -525,6 +605,14 @@ public enum MiriamType {
       "refseq",
       "NP_012345"),
 
+  RGD("Rat Genome Database",
+      "http://rgd.mcw.edu/",
+      "urn:miriam:rgd",
+      new Class<?>[] { Reaction.class }, "MIR:00000047",
+      new Class<?>[] {},
+      "rgd",
+      "2018"),
+
   /**
    * Rhea: http://www.rhea-db.org/.
    */
@@ -547,6 +635,14 @@ public enum MiriamType {
       "sgd",
       "S000003909"),
 
+  SPIKE("SPIKE Map",
+      "http://www.cs.tau.ac.il/~spike/",
+      "urn:miriam:spike.map",
+      new Class<?>[] {}, "MIR:00000321",
+      new Class<?>[] {},
+      "spike.map",
+      "spike00001"),
+
   /**
    * STITCH: http://stitch.embl.de/.
    */
@@ -606,6 +702,14 @@ public enum MiriamType {
       "ctd.chemical",
       "D001151"),
 
+  TTD_Drug("TTD Drug",
+      "http://bidd.nus.edu.sg/group/ttd/ttd.asp",
+      "urn:miriam:ttd.drug",
+      new Class<?>[] {}, "MIR:00000092",
+      new Class<?>[] {},
+      "ttd.drug",
+      "DAP000773"),
+
   /**
    * UniGene: http://www.ncbi.nlm.nih.gov/unigene.
    */
@@ -699,7 +803,7 @@ public enum MiriamType {
    * Wikipedia: http://en.wikipedia.org/wiki/Main_Page.
    */
   WIKIPEDIA("Wikipedia (English)",
-      "http://en.wikipedia.org/wiki/Main_Page", // /
+      "http://en.wikipedia.org/wiki/Main_Page",
       new String[] { "urn:miriam:wikipedia.en" },
       new Class<?>[] {}, "MIR:00000384",
       new Class<?>[] {},
@@ -710,12 +814,22 @@ public enum MiriamType {
    * WormBase: http://wormbase.bio2rdf.org/fct.
    */
   WORM_BASE("WormBase",
-      "http://wormbase.bio2rdf.org/fct", // /
+      "http://wormbase.bio2rdf.org/fct",
       new String[] { "urn:miriam:wormbase" },
       new Class<?>[] {}, "MIR:00000027",
       new Class<?>[] {},
       "wb",
-      "WBGene00000001");
+      "WBGene00000001"),
+
+  ZFIN("ZFIN Bioentity",
+      "http://zfin.org",
+      new String[] { "urn:miriam:zfin" },
+      new Class<?>[] {}, "MIR:00000079",
+      new Class<?>[] {},
+      "zfin",
+      "ZDB-GENE-041118-11")
+
+  ;
 
   private static Logger logger = LogManager.getLogger(MiriamType.class);
   /**