Commits · b027b2db964e262149b135dae5b9ba77b2f63116 · LCSB-BioCore / COBREXA.jl

Apr 20, 2022
- more comments · b027b2db
  St. Elmo authored 2 years ago
  
  b027b2db
- implement reviews · efdd9fb1
  St. Elmo authored 2 years ago
  
  efdd9fb1
Apr 19, 2022
- fix model · 3fcc98a1
  St. Elmo authored 2 years ago
  
  3fcc98a1
- format again · a140d45e
  St. Elmo authored 2 years ago
  
  a140d45e
- fixed gecko · 5c6c4f92
  St. Elmo authored 2 years ago
  
  5c6c4f92
- remove relaxed arm test · 09393470
  St. Elmo authored 2 years ago
  
  09393470
- fix more kwargs · 64291b6a
  St. Elmo authored 2 years ago
  
  64291b6a
- fix test kwargs · f2d37f03
  St. Elmo authored 2 years ago
  
  f2d37f03
Apr 15, 2022
- clean up · a563a2ae
  Miroslav Kratochvil authored 2 years ago
  
  a563a2ae
Apr 13, 2022
- remove unused code, sprinkle TODOs · 50735009
  Miroslav Kratochvil authored 2 years ago
  
  50735009
- switch gecko to gene-based mass groups (seems simpler) · a9677a09
  Miroslav Kratochvil authored 2 years ago
  
  a9677a09
- works partially · 6663c2f7
  Miroslav Kratochvil authored 2 years ago
  
  6663c2f7
- gecko stage 1 (still TODO: the mass fraction coupling) · ea25d314
  Miroslav Kratochvil authored 2 years ago
  
  ea25d314
Apr 12, 2022
- many small smoment fixes that should make it just work · 1dd5d7b7
  Miroslav Kratochvil authored 2 years ago
  
  1dd5d7b7
- fix the last formatting error · 6a1ba06d
  Miroslav Kratochvil authored 2 years ago
  
  6a1ba06d
- format and fix test · a7984e42
  St. Elmo authored 2 years ago
  
  a7984e42
Apr 11, 2022
- fix func name · 3ff2ab67
  St. Elmo authored 2 years ago
  
  3ff2ab67
- fix args · df1d4b37
  St. Elmo authored 2 years ago
  
  df1d4b37
Apr 10, 2022
- format · 45346049
  St. Elmo authored 2 years ago
  
  45346049
- add smoment and fixup gecko · e846c58f
  St. Elmo authored 2 years ago
  
  e846c58f
Apr 08, 2022
- fixup gecko · 577b1af4
  St. Elmo authored 2 years ago
  
  577b1af4
- fix kwargs in tests · 7e405eb6
  St. Elmo authored 2 years ago
  
  7e405eb6
- obliterate traling whitespace · 3998673e
  Miroslav Kratochvil authored 2 years ago and St. Elmo committed 2 years ago
  
  3998673e
- added data source · 8dd3d1bc
  St. Elmo authored 2 years ago
  
  8dd3d1bc
- format · 885d96b4
  St. Elmo authored 2 years ago
  
  885d96b4
- fixed enzyme constrained problems · cf829449
  St. Elmo authored 2 years ago
  
  cf829449
- gecko streamlined · 9f8aa921
  St. Elmo authored 2 years ago
  
  9f8aa921
- fix test · bacdf065
  St. Elmo authored 3 years ago
  
  bacdf065
- make explicit model change · 8ced80f6
  St. Elmo authored 3 years ago
  
  8ced80f6
- format · a876a1a8
  St. Elmo authored 3 years ago
  
  a876a1a8
- added smoment and small fixes to gecko · 0068237f
  St. Elmo authored 3 years ago
  
  0068237f
- added gecko and test · f32716bf
  St. Elmo authored 3 years ago
  
  f32716bf
Apr 05, 2022
- flux_variability_analysis now works on fluxes instead of bare reactions · d336a7d6
  Miroslav Kratochvil authored 2 years ago
  
  ...the way is backwards compatible, and there's completely backwards-compatible reaction_variability_analysis.
  d336a7d6
Feb 09, 2022
- clean up, remove obsolete tests · ed880cab
  Miroslav Kratochvil authored 3 years ago
  
  ed880cab
Jan 25, 2022
- test loading and parsing of Recon3D · c43d883e
  Miroslav Kratochvil authored 3 years ago
  
  c43d883e
Dec 06, 2021
- added more details to thermo data · 35422a6b
  St. Elmo authored 3 years ago
  
  35422a6b
- added data source · 10e66875
  St. Elmo authored 3 years ago
  
  10e66875
Nov 29, 2021
- added change_objective! function and tests · e2d3a7f9
  St. Elmo authored 3 years ago
  
  e2d3a7f9
Nov 27, 2021
- Extended max min driving force to general models and implement variability analysis · d21cde80
  St. Elmo authored 3 years ago
  
  d21cde80
Nov 21, 2021
- add a simple test for checking that the gene vectors work · 69ef4a54
  Miroslav Kratochvil authored 3 years ago
  
  69ef4a54