Commits · 442fa54dd67225c6c1b995a38aa9d69a321a9c2a · LCSB-BioCore / COBREXA.jl

This project is mirrored from https://github.com/LCSB-BioCore/COBREXA.jl.git. Pull mirroring updated Feb 05, 2023.

01 Apr, 2021 9 commits
- add the minimized favicon · 442fa54d
  Laurent Heirendt authored Apr 01, 2021 and Miroslav Kratochvil committed Apr 01, 2021
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Commited-by: Mirek Kratochvil <miroslav.kratochvil@uni.lu>
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  442fa54d
- Merge pull request #48 from LCSB-BioCore/mk-clean-downloads · 0280d037
  Laurent Heirendt authored Apr 01, 2021
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clean-up downloading of files for testing
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  0280d037
- Merge pull request #46 from LCSB-BioCore/mk-fix-nice-fba-variants · b2953ef6
  Laurent Heirendt authored Apr 01, 2021
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fix the nice FBA variants (again)
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  b2953ef6
- remove dep on SBML.Maybe · d04cff63
  Miroslav Kratochvil authored Apr 01, 2021
  
  d04cff63
- ignore all test data files · e87cfbbe
  Miroslav Kratochvil authored Apr 01, 2021
  
  e87cfbbe
- download&cache testing stuff systematically, check hashes of everything · aa114419
  Miroslav Kratochvil authored Apr 01, 2021
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Closes #40
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  aa114419
- fix the nice FBA variants (again) · cc30e843
  Miroslav Kratochvil authored Apr 01, 2021
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Closes #39
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  cc30e843
- Merge pull request #44 from LCSB-BioCore/lh-issue-41 · 3c09bc0f
  Miroslav Kratochvil authored Apr 01, 2021
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fixes for links
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  3c09bc0f
- fixes for links · 6941ad51
  Laurent Heirendt authored Apr 01, 2021
  
  6941ad51
31 Mar, 2021 7 commits
- clean up all trailing whitespace · f2b6185e
  Miroslav Kratochvil authored Mar 31, 2021
  
  f2b6185e
- consistency: enforce serpent_case · bdf6d98a
  Miroslav Kratochvil authored Mar 31, 2021
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Closes #32
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  bdf6d98a
- FBA test file has changed · 57373df3
  Miroslav Kratochvil authored Mar 31, 2021
  
  57373df3
- fix debug output from matlab model loading · 7f0a80e9
  Miroslav Kratochvil authored Mar 31, 2021
  
  7f0a80e9
- simplify downloading and verification of test files, also fix 2 missing ones · 6a0b4469
  Miroslav Kratochvil authored Mar 31, 2021
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Refs #40
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  6a0b4469
- Merge pull request #35 from LCSB-BioCore/mo-new-master · 4f4f3703
  Laurent Heirendt authored Mar 31, 2021
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fix new-master and cobratools remaining integration issues
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  4f4f3703
- implement suggestions · a36f397c
  St. Elmo authored Mar 31, 2021
  
  a36f397c
30 Mar, 2021 9 commits
- format again · a4a5b67d
  St. Elmo authored Mar 30, 2021
  
  a4a5b67d
- change solveLP back to optimizeModel · 18b1fa61
  St. Elmo authored Mar 30, 2021
  
  18b1fa61
- format fix · 6a1743ac
  St. Elmo authored Mar 30, 2021
  
  6a1743ac
- fixed sampling · 92648559
  St. Elmo authored Mar 30, 2021
  
  92648559
- fixed analysis tets · e2141aa5
  St. Elmo authored Mar 30, 2021
  
  e2141aa5
- moved IO files around and fixed tests · 007ee8c6
  St. Elmo authored Mar 30, 2021
  
  007ee8c6
- updated CobraModel to be a subtype of MetabolicModel · 4c507b74
  St. Elmo authored Mar 30, 2021
  
  4c507b74
- Merge branch 'integrate-ct' · bb16e6c8
  Laurent Heirendt authored Mar 30, 2021
  
  bb16e6c8
- Merge pull request #30 from LCSB-BioCore/mo-generic-interface-integrate-ct · d1b3adf1
  Miroslav Kratochvil authored Mar 30, 2021
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WIP: integrate generic interface & cobratools
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  d1b3adf1
25 Mar, 2021 13 commits
- Merge pull request #34 from LCSB-BioCore/mk-convert-models · bf593c9c
  Laurent Heirendt authored Mar 25, 2021
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Properly support multiple model types and conversions
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  bf593c9c
- cleaning: add some useful gitignore entries · 0d4d2d66
  Miroslav Kratochvil authored Mar 25, 2021
  
  0d4d2d66
- cleanup: format one forgotten formating · aba6451a
  Miroslav Kratochvil authored Mar 25, 2021
  
  aba6451a
- add tests, fix the semantics of `isequal` for models · ba74f9b1
  Miroslav Kratochvil authored Mar 25, 2021
  
  ba74f9b1
- Merge pull request #23 from LCSB-BioCore/mk-generic-interface · 9d21ddb3
  Laurent Heirendt authored Mar 25, 2021
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Make analysis functions generic and easily extensible
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  9d21ddb3
- Merge pull request #33 from LCSB-BioCore/mk-fba-outputs · 964f0339
  Laurent Heirendt authored Mar 25, 2021
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add additional FBA output formats
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  964f0339
- rename the files to match the inner types · 3b95755f
  Miroslav Kratochvil authored Mar 25, 2021
  
  3b95755f
- SBML data are a model too, make the loading more flexible · 233dc92b
  Miroslav Kratochvil authored Mar 24, 2021
  
  233dc92b
- uncouple the coupled variant of the linear model · 553236f2
  Miroslav Kratochvil authored Mar 24, 2021
  
  553236f2
- add tests for FBA outputs · 612067f8
  Miroslav Kratochvil authored Mar 25, 2021
  
  612067f8
- add additional FBA output formats · e5770617
  Miroslav Kratochvil authored Mar 24, 2021
  
  e5770617
- rename the abstract type to avoid ambiguity · 3a17bb05
  Miroslav Kratochvil authored Mar 25, 2021
  
  3a17bb05
- solveLP is now optimizeModel · 2f461a6b
  Miroslav Kratochvil authored Mar 25, 2021
  
  2f461a6b
24 Mar, 2021 2 commits
- hit and run sampling tests pass · c3028f36
  St. Elmo authored Mar 24, 2021
  
  c3028f36
- fixed hit_and_run · 54cc5ed6
  St. Elmo authored Mar 24, 2021
  
  54cc5ed6