fixen

cobrexa.def

-Bootstrap: library
+BootStrap: library
 From: cylon-x/lcsb-biocore/julia-base:latest
 
 %setup
-    #export GIT_WORK_TREE="${SINGULARITY_ROOTFS}/project/"
-    #export GIT_DIR="`pwd`/.git"
-    #mkdir -p "${GIT_WORK_TREE}"
-    #git checkout -f
-    cp -a "`pwd`" "${SINGULARITY_ROOTFS}/project/"
-    rm -fr "${SINGULARITY_ROOTFS}/project/.git/"
+    export GIT_WORK_TREE="${SINGULARITY_ROOTFS}/project/"
+    export GIT_DIR="`pwd`/.git"
+    mkdir -p "${GIT_WORK_TREE}"
+    git checkout -f
 
 %post
     export JULIA_DEPOT_PATH=/user/.julia