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Commit b17d1aa1 authored by Miroslav Kratochvil's avatar Miroslav Kratochvil :bicyclist:
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update readme to the new state

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......@@ -226,27 +226,30 @@ the test suite to ensure that everything works as expected:
### Prebuilt images [![docker][docker-img]][docker-url]
Docker image is available from the docker hub as
[lcsbbiocore/cobrexa.jl][docker-url]. Download and use it as usual with docker:
[lcsbbiocore/cobrexa.jl][docker-url], and from GitHub container repository.
Download and use them as usual with docker:
```sh
docker pull lcsbbiocore/cobrexa.jl
docker run -ti --rm lcsbbiocore/cobrexa.jl
docker run -ti --rm lcsbbiocore/cobrexa.jl:latest
# or alternatively from ghcr.io
docker run -ti --rm ghcr.io/lcsb-biocore/docker/cobrexa.jl:latest
```
In the container, you should get a `julia` shell with the important packages
already installed, you may continue the above tutorial from `using COBREXA`.
Apptainer (formerly Singularity) images are available from [LCSB
GitLab](https://gitlab.lcsb.uni.lu/lcsb-biocore/COBREXA.jl) as artifacts at
release tags, starting after COBREXA.jl version `1.2.1`. To download the image,
open [the repository tag
listing](https://gitlab.lcsb.uni.lu/lcsb-biocore/COBREXA.jl/-/tags), and use
the button on the right to get the `cobrexa.sif` image. After that, run:
already installed, and you may immediately continue the above tutorial from
`using COBREXA`.
Apptainer (aka Singularity) images are available from GitHub container
repository. To start one, run:
```sh
singularity run cobrexa.sif
singularity run oras://ghcr.io/lcsb-biocore/apptainer/cobrexa.jl:latest
```
...which gives you a running Julia session with COBREXA.jl loaded.
If you require precise reproducibility, use a tag like `v1.2.2` instead of
`latest` (all releases since 1.2.2 are tagged this way).
<!--acknowledgements_begin-->
## Acknowledgements
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