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LCSB-BioCore
COBREXA.jl
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b17d1aa1
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b17d1aa1
authored
3 years ago
by
Miroslav Kratochvil
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update readme to the new state
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@@ -226,27 +226,30 @@ the test suite to ensure that everything works as expected:
### Prebuilt images [![docker][docker-img]][docker-url]
Docker image is available from the docker hub as
[
lcsbbiocore/cobrexa.jl
][
docker-url
]
. Download and use it as usual with docker:
[
lcsbbiocore/cobrexa.jl
][
docker-url
]
, and from GitHub container repository.
Download and use them as usual with docker:
```
sh
docker pull lcsbbiocore/cobrexa.jl
docker run
-ti
--rm
lcsbbiocore/cobrexa.jl
docker run
-ti
--rm
lcsbbiocore/cobrexa.jl:latest
# or alternatively from ghcr.io
docker run
-ti
--rm
ghcr.io/lcsb-biocore/docker/cobrexa.jl:latest
```
In the container, you should get a
`julia`
shell with the important packages
already installed, you may continue the above tutorial from
`using COBREXA`
.
Apptainer (formerly Singularity) images are available from
[
LCSB
GitLab
](
https://gitlab.lcsb.uni.lu/lcsb-biocore/COBREXA.jl
)
as artifacts at
release tags, starting after COBREXA.jl version
`1.2.1`
. To download the image,
open
[
the repository tag
listing
](
https://gitlab.lcsb.uni.lu/lcsb-biocore/COBREXA.jl/-/tags
)
, and use
the button on the right to get the
`cobrexa.sif`
image. After that, run:
already installed, and you may immediately continue the above tutorial from
`using COBREXA`
.
Apptainer (aka Singularity) images are available from GitHub container
repository. To start one, run:
```
sh
singularity run
cobrexa.sif
singularity run
oras://ghcr.io/lcsb-biocore/apptainer/cobrexa.jl:latest
```
...which gives you a running Julia session with COBREXA.jl loaded.
If you require precise reproducibility, use a tag like
`v1.2.2`
instead of
`latest`
(all releases since 1.2.2 are tagged this way).
<!--acknowledgements_begin-->
## Acknowledgements
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