checkout with git, not cp

a8e22fd8 · Miroslav Kratochvil · 5c060cbc · a8e22fd8
Commit a8e22fd8 authored 3 years ago by Miroslav Kratochvil
--- a/cobrexa.def
+++ b/cobrexa.def
@@ -2,7 +2,7 @@ Bootstrap: library
 From: cylon-x/lcsb-biocore/julia-base:latest

 %setup
-    cp -a `pwd` ${SINGULARITY_ROOTFS}/project/
+    GIT_DIR=`pwd`/.git GIT_WORK_TREE=${SINGULARITY_ROOTFS}/project/ git checkout -f

 %post
    export JULIA_DEPOT_PATH=/user/.julia