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LCSB-BioCore
COBREXA.jl
Commits
65c8e864
Verified
Commit
65c8e864
authored
Apr 01, 2021
by
Laurent Heirendt
✈
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update readme instructions
parent
e0fac894
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README.md
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65c8e864
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@@ -30,16 +30,18 @@ This is package aims to provide constraint based reconstruction and analysis too
To install this package:
`] add ???`
. See the documentation for more information.
## Quick Example
Let's use
`COBREXA.jl`
to perform classic flux balance analysis on an
*E. coli*
community.
```
julia
using
COBREXA
using
JuMP
using
Tulip
# pick any solver supported by JuMP
# download the model
model_file
=
COBREXA
.
Downloads
.
download
(
"http://bigg.ucsd.edu/static/models/iJO1366.json"
,
"iJO1366.json"
)
# Import E. coli models (models have pretty printing)
model_1
=
read_model
(
"iJO1366.json"
)
model_2
=
read_model
(
"iJO1366.json"
)
model_3
=
read_model
(
"iJO1366.json"
)
model_1
=
read_model
(
model_file
)
model_2
=
read_model
(
model_file
)
model_3
=
read_model
(
model_file
)
# Build an exascale model
exascale_model
=
join
(
model_1
,
model_2
,
model_3
,
...
)
...
...
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