avoid git for apptainer build

60b31966 · Miroslav Kratochvil · d94eff63 · 60b31966
Commit 60b31966 authored 3 years ago by Miroslav Kratochvil
--- a/cobrexa.def
+++ b/cobrexa.def
@@ -2,10 +2,7 @@ Bootstrap: library
 From: cylon-x/lcsb-biocore/julia-base:latest

 %setup
-    dir=`pwd`
-    git clone \
-    "file://$dir" \
-    ${SINGULARITY_ROOTFS}/project --branch master --single-branch
+    cp -a `pwd` ${SINGULARITY_ROOTFS}/project/

 %post
    export JULIA_DEPOT_PATH=/user/.julia