Add acknowledgements

(complies with PerMedCoE rules)

README.md

@@ -120,6 +120,7 @@ the test suite to ensure that everything works as expected:
 ] test COBREXA
 ```
 
+<!--acknowledgements_begin-->
 ## Acknowledgements
 
 `COBREXA.jl` is developed at the Luxembourg Centre for Systems Biomedicine of
@@ -128,7 +129,10 @@ cooperating with the Institute for Quantitative and Theoretical Biology at the H
 Heine University in Düsseldorf ([qtb.hhu.de](https://www.qtb.hhu.de/)).
 
 The development was supported by European Union's Horizon 2020 Programme under
-PerMedCoE project ([permedcoe.eu](https://www.permedcoe.eu/)) agreement no.
-951773.
+PerMedCoE project ([permedcoe.eu](https://www.permedcoe.eu/)) agreement no. 951773.
+<!--acknowledgements_end-->
+
+<!--ack_logos_begin-->
+<img src="https://lcsb-biocore.github.io/COBREXA.jl/stable/assets/cobrexa.svg" alt="COBREXA logo" height="64px" style="height:64px; width:auto">   <img src="https://lcsb-biocore.github.io/COBREXA.jl/stable/assets/unilu.svg" alt="Uni.lu logo" height="64px" style="height:64px; width:auto">   <img src="https://lcsb-biocore.github.io/COBREXA.jl/stable/assets/lcsb.svg" alt="LCSB logo" height="64px" style="height:64px; width:auto">   <img src="https://lcsb-biocore.github.io/COBREXA.jl/stable/assets/hhu.svg" alt="HHU logo" height="64px" style="height:64px; width:auto">   <img src="https://lcsb-biocore.github.io/COBREXA.jl/stable/assets/qtb.svg" alt="QTB logo" height="64px" style="height:64px; width:auto">   <img src="https://lcsb-biocore.github.io/COBREXA.jl/stable/assets/permedcoe.svg" alt="PerMedCoE logo" height="64px" style="height:64px; width:auto">
+<!--ack_logos_end-->
 
-<img src="docs/src/assets/cobrexa.svg" alt="COBREXA logo" height="64px">   <img src="docs/src/assets/unilu.svg" alt="Uni.lu logo" height="64px">   <img src="docs/src/assets/lcsb.svg" alt="LCSB logo" height="64px">   <img src="docs/src/assets/hhu.svg" alt="HHU logo" height="64px">   <img src="docs/src/assets/qtb.svg" alt="QTB logo" height="64px">   <img src="docs/src/assets/permedcoe.svg" alt="PerMedCoE logo" height="64px">

docs/make.jl

@@ -34,14 +34,15 @@ for notebook in notebooks
 end
 
 # generate index.md from .template and the quickstart in README.md
-quickstart = match(
-    r"<!--quickstart_begin-->\n([^\0]*)<!--quickstart_end-->",
-    open(f -> read(f, String), joinpath(@__DIR__, "..", "README.md")),
-).captures[1]
-index_md = replace(
-    open(f -> read(f, String), joinpath(@__DIR__, "src", "index-template.md")),
-    "<!--insert_quickstart-->\n" => quickstart,
-)
+readme=open(f -> read(f, String), joinpath(@__DIR__, ".." ,"README.md"))
+quickstart = match(r"<!--quickstart_begin-->\n([^\0]*)<!--quickstart_end-->", readme).captures[1]
+acks = match(r"<!--acknowledgements_begin-->\n([^\0]*)<!--acknowledgements_end-->", readme).captures[1]
+ack_logos = match(r"<!--ack_logos_begin-->\n([^\0]*)<!--ack_logos_end-->", readme).captures[1]
+index_md = open(f -> read(f, String),
+    joinpath(@__DIR__, "src", "index.md.template"))
+index_md = replace(index_md, "<!--insert_quickstart-->\n" => quickstart)
+index_md = replace(index_md, "<!--insert_acknowledgements-->\n" => acks)
+index_md = replace(index_md, "<!--insert_ack_logos-->\n" => ack_logos)
 open(f -> write(f, index_md), joinpath(@__DIR__, "src", "index.md"), "w")
 
 # build the docs

docs/src/index-template.md → docs/src/index.md.template

@@ -69,3 +69,9 @@ Pages = ["functions.md"]
 
 If you wish to contribute code, patches or improvements to `COBREXA.jl`, please
 read the basic [contribution guidelines and hints.](howToContribute.md).
+
+<!--insert_acknowledgements-->
+
+```@raw html
+<!--insert_ack_logos-->
+```