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## Files to download to this directory:

## annotation files
```
wget https://zenodo.org/record/802891/files/CCDS_IDS.txt  
wget https://zenodo.org/record/802891/files/CCDS2Ensembl2HGNC.txt  
wget https://zenodo.org/record/802891/files/refSeqEnsCCDS.tsv  
```
## family definitions and scores per families (para and parasub)
```
wget https://zenodo.org/record/802891/files/paraloggroups.HGNC.CCDS.tsv  
wget https://zenodo.org/record/802891/files/parasubfam.probs.tsv  
wget https://zenodo.org/record/802891/files/parascore.genes.tsv  
wget https://zenodo.org/record/802891/files/parasubscore.genes.tsv  
wget https://zenodo.org/record/802891/files/parascores.families.tsv  
wget https://zenodo.org/record/802891/files/parasubscores.subfamilies.tsv  
```

## Para scores per gene 
Per gene one file with stats: paraScores/<genename>.withStats.txt

````
wget https://zenodo.org/record/802891/files/paraScores.tar.gz  
tar -zxvf paraScores.tar.gz  
```

## Parasub scores per gene
Per gene one file with stats: parasubScores/<genename>.withStats.txt

```
wget https://zenodo.org/record/802891/files/parasubgroups.detailed.tsv  
wget https://zenodo.org/record/802891/files/parasubScores.tar.gz  
tar -zxvf parasubScores.tar.gz  
```

## Para homology scores per gene
Per gene one file with stats: parahomoScores/<genename>.withStats.txt

```
wget https://zenodo.org/record/802891/files/parahomogroups.detailed.tsv  
wget https://zenodo.org/record/802891/files/parahomoScores.tar.gz  
tar -zxvf parahomoScores.tar.gz   
```