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Files to download to this directory:
# annotation files
wget https://zenodo.org/record/802891/files/CCDS_IDS.txt
wget https://zenodo.org/record/802891/files/CCDS2Ensembl2HGNC.txt
wget https://zenodo.org/record/802891/files/refSeqEnsCCDS.tsv
# paragroup definitions
wget https://zenodo.org/record/802891/files/paraloggroups.HGNC.CCDS.tsv
wget https://zenodo.org/record/802891/files/parasubfam.probs.tsv
wget https://zenodo.org/record/802891/files/parascore.genes.tsv
wget https://zenodo.org/record/802891/files/parasubscore.genes.tsv
wget https://zenodo.org/record/802891/files/parascores.families.tsv
wget https://zenodo.org/record/802891/files/parasubscores.subfamilies.tsv
# score per gene
wget https://zenodo.org/record/802891/files/paraScores.tar.gz
tar -zxvf paraScores.tar.gz
wget https://zenodo.org/record/802891/files/parasubgroups.detailed.tsv
wget https://zenodo.org/record/802891/files/parasubScores.tar.gz
tar -zxvf parasubScores.tar.gz
wget https://zenodo.org/record/802891/files/parahomogroups.detailed.tsv
wget https://zenodo.org/record/802891/files/parahomoScores.tar.gz
tar -zxvf parahomoScores.tar.gz