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Graph representation learning modelling pipeline exploiting sample-similarity networks derived from high-throughput omics profiles to learn PD-specific fingerprints from the spatial distribution of molecular abundance similarities in an end-to-end fashion. The scripts apply the graph representation learning modelling pipeline on sample-similarity networks of transcriptomics and metabolomics data from the PPMI and the LuxPARK cohort, respectively.

R code for an interface to MINERVA API and helper functions

A repository to store code used in various projects for data cleanup, integration or analysis.

STAR and DESeq2

R code for an interface to MINERVA API and helper functions

Externally visible Howto Cards (preview at https://lcsb.pages.uni.lu/howto/external )

This repository contains the entire microbiome code based on COBREXA.jl

Repository for TransSynW webinterface, available at transsynw.lcsb.uni.lu