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Elisa Gomezdelope / ML_UPDRSIII_metab_transc
MIT LicenseThis repository contains the code for ML analyses performed in Chapter 5 of my PhD thesis "Interpretable machine learning on omics data for the study of UPDRS III prognosis". The project consists on predicting the Unified Parkinson’s Disease Rating Scale Part III (UPDRS III) motor scores (mild/severe when classification) from whole blood transcriptomics and blood plasma metabolomics using measurements from the baseline clinical visit, and temporal or dynamic features engineered from a short temporal series of 4 and 3 timepoints, respectively, from the PPMI cohort and the LuxPARK cohort, aiming at identifying molecular and higher-level functional fingerprints linked specifically to the motor symptoms in PD.
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ESB / ONT_pilot_gitlab
GNU General Public License v3.0 or laterMethod testing and analyses of Oxford Nanopore Technology (ONT) sequencing runs Data obtained by sequencing "generous donor B" across several runs Original data prepared by Rashi (post-sequencing) Initial analyses performed by CCLUpdated -
Marina Popleteeva / courses
Creative Commons Zero v1.0 UniversalRepository for all slides related to R3 courses.
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R3 / apps / generator
Apache License 2.0This project includes the generator scripts for generating the index files of the howto-cards and modules (handbook, qms, ...)
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LCSB-BioCore / publications / Hemedan 2023-Boolean modelling of PD
Apache License 2.0Updated -
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Polina Novikova / archaea-in-gut
MIT LicenseUpdated -
ESB / archaea_in_gut
MIT LicenseUpdated -
Annegrät Daujeumont / basic-practice-pages
MIT LicenseBasic practice repository for git trainings
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This project hosts the JSON schemas used for representing the metadata of submissions to the ELIXIR translational data repository. It also provides validation utility methods.
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R3 / school / git / basic-practice-pages
MIT LicenseBasic practice repository for git trainings
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Marie Fossepre / basic-practice-pages
MIT LicenseBasic practice repository for git trainings
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Miriam Fougeras / basic-practice-pages
MIT LicenseBasic practice repository for git trainings
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Jil Fischbach / basic-practice-pages
MIT LicenseBasic practice repository for git trainings
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Laurent Heirendt / courses
Creative Commons Zero v1.0 UniversalRepository for all slides related to R3 courses.
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Computational modelling and simulation / pb4covid19
BSD 3-Clause "New" or "Revised" LicensePhysiBoSS-COVID: the Boolean modelling of COVID-19 signalling pathways in a multicellular simulation framework
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