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Repository containing workflows for IMP3 downstream analyses Related project(s): NOMIS

A project for debugging files

Educational platform for ISB401 course.

Utilities that work with GNPS records.

R package to calculate SPLASHes from MassBank records.

A new shiny interface to generate transformation products (TPs) from parent compounds (pesticides, pharmaceuticals, etc.).

derived from the work done here https://github.com/snakemake-workflows/chipseq

Additional Supporting Information to "Occurrence and Distribution of Pharmaceuticals and their Transformation Products in Luxembourgish Surface Waters" by Singh et al.

The COVIDminer text mining project (https://rupertoverall.net/covidminer/) reads the published literature concerning SARS-CoV-2 and COVID-19 to extract statements about (primarily molecular) interactions. Using the API associated with this project, p

This GitLab folder provides the scripts that were used in my Master Thesis Project. For any types of questions, please feel free to contact me.

The sensitivity analysis of IFN1 boolean model is investigated against over expression and knockout mutations. The simulation is performed based on the ranked sensitivity values. Attractors' analysis is also performed to support the main conclusions.