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Elisa Gomezdelope / ML_PD_metab_transc
MIT LicenseThis repository contains the code for ML analyses performed in Chapter 4 of my PhD thesis "Interpretable Machine Learning on omics data for biomarker discovery in Parkinson's disease". The project consists on performing Parkinson's disease (PD) case-control classification from blood plasma metabolomics measurements at the baseline clinical visit from the LuxPARK cohort, and from whole blood transcriptomics data at baseline as well as dynamic features engineered from a short temporal series of 4 timepoints from the PPMI cohort. The study involves evaluation of different feature selection strategies, The goal was to build and test a collection of ML models and, most interestingly, identify molecular and higher-level functional representations associated with PD diagnosis.
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R3 / apps / generator
Apache License 2.0This project includes the generator scripts for generating the index files of the howto-cards and modules (handbook, qms, ...)
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This project hosts the JSON schemas used for representing the metadata of submissions to the ELIXIR translational data repository. It also provides validation utility methods.
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Jenny Thuy Dung Tran / basic-practice-pages
MIT LicenseBasic practice repository for git trainings
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Janine Schulz / basic-practice-pages
MIT LicenseBasic practice repository for git trainings
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Computational modelling and simulation / GeneRegulationAnalysis
GNU Affero General Public License v3.0Gene regulation inference of COVID-19
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R3 / apps / tailorbird / linkchecker
Apache License 2.0Updated -
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Carmen Lahr / basic-practice-pages
MIT LicenseBasic practice repository for git trainings. Carmen's fork.
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Jil Fischbach / basic-practice-pages
MIT LicenseBasic practice repository for git trainings
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IDERHA / DRS-cli
Apache License 2.0Client for GA4GH Data Repository Service (DRS) API service
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Marina Popleteeva / courses
Creative Commons Zero v1.0 UniversalRepository for all slides related to R3 courses.
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LCSB-BioCore / publications / Hemedan 2023-Boolean modelling of PD
Apache License 2.0Updated -
ESB / archaea_in_gut
MIT LicenseUpdated -
Polina Novikova / archaea-in-gut
MIT LicenseUpdated -
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