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Graph representation learning modelling pipeline exploiting molecular interaction networks of transcriptomics (protein-protein interactions) and metabolomics (metabolite-metabolite interactions) to learn PD-specific fingerprints from the spatial distribution of molecular relationships in an end-to-end fashion. The scripts apply the graph representation learning modelling pipeline on networks of molecular interactions, where transcriptomics and metabolomics data from the PPMI and the LuxPARK cohort, respectively, are projected.
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Marina Popleteeva / courses
Creative Commons Zero v1.0 UniversalRepository for all slides related to R3 courses.
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Elisa Gomezdelope / ML_UPDRSIII_metab_transc
MIT LicenseThis repository contains the code for ML analyses performed in Chapter 5 of my PhD thesis "Interpretable machine learning on omics data for the study of UPDRS III prognosis". The project consists on predicting the Unified Parkinson’s Disease Rating Scale Part III (UPDRS III) motor scores (mild/severe when classification) from whole blood transcriptomics and blood plasma metabolomics using measurements from the baseline clinical visit, and temporal or dynamic features engineered from a short temporal series of 4 and 3 timepoints, respectively, from the PPMI cohort and the LuxPARK cohort, aiming at identifying molecular and higher-level functional fingerprints linked specifically to the motor symptoms in PD.
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elixir / daisy
GNU Affero General Public License v3.0Data Information System (DAISY) is a data bookkeeping application designed to help Biomedical Research institutions with their GDPR compliance.
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R3 / apps / generator
Apache License 2.0This project includes the generator scripts for generating the index files of the howto-cards and modules (handbook, qms, ...)
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LCSB-BioCore / publications / Hemedan 2023-Boolean modelling of PD
Apache License 2.0Updated -
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Polina Novikova / archaea-in-gut
MIT LicenseUpdated -
ESB / archaea_in_gut
MIT LicenseUpdated -
Annegrät Daujeumont / basic-practice-pages
MIT LicenseBasic practice repository for git trainings
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R3 / school / git / basic-practice-pages
MIT LicenseBasic practice repository for git trainings
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Marie Fossepre / basic-practice-pages
MIT LicenseBasic practice repository for git trainings
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Miriam Fougeras / basic-practice-pages
MIT LicenseBasic practice repository for git trainings
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Laurent Heirendt / courses
Creative Commons Zero v1.0 UniversalRepository for all slides related to R3 courses.
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Jil Fischbach / basic-practice-pages
MIT LicenseBasic practice repository for git trainings
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Computational modelling and simulation / pb4covid19
BSD 3-Clause "New" or "Revised" LicensePhysiBoSS-COVID: the Boolean modelling of COVID-19 signalling pathways in a multicellular simulation framework
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