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Basic practice repository for git trainings

Basic practice repository for git trainings

Gene regulation inference of COVID-19

Theme for presentations.

All scripts used for AMR and MGE analysis of the LAO dataset

Benchmark data and code for UniFuncNet manuscript

This project hosts the JSON schemas used for representing the metadata of submissions to the ELIXIR translational data repository. It also provides validation utility methods.

This project includes the generator scripts for generating the index files of the howto-cards and modules (handbook, qms, ...)

This repository contains the code for ML analyses performed in Chapter 4 of my PhD thesis "Interpretable Machine Learning on omics data for biomarker discovery in Parkinson's disease". The project consists on performing Parkinson's disease (PD) case-control classification from blood plasma metabolomics measurements at the baseline clinical visit from the LuxPARK cohort, and from whole blood transcriptomics data at baseline as well as dynamic features engineered from a short temporal series of 4 timepoints from the PPMI cohort. The study involves evaluation of different feature selection strategies, The goal was to build and test a collection of ML models and, most interestingly, identify molecular and higher-level functional representations associated with PD diagnosis.

Benchmark scripts related to the COBREXA.jl publication

This project hosts the JSON schemas used for representing the metadata of submissions to the ELIXIR translational data repository. It also provides validation utility methods.

HTML and CSS template for the static sites